Strain Fitness in Variovorax sp. OAS795 around ABID97_RS29175

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS29170 and ABID97_RS29175 are separated by 29 nucleotidesABID97_RS29175 and ABID97_RS29180 are separated by 48 nucleotides ABID97_RS29170: ABID97_RS29170 - alpha/beta hydrolase, at 752,832 to 753,800 _RS29170 ABID97_RS29175: ABID97_RS29175 - SDR family oxidoreductase, at 753,830 to 754,534 _RS29175 ABID97_RS29180: ABID97_RS29180 - NADP-dependent oxidoreductase, at 754,583 to 755,584 _RS29180 Position (kb) 753 754 755Strain fitness (log2 ratio) -1 0 1at 752.911 kb on + strandat 753.079 kb on + strand, within ABID97_RS29170at 753.079 kb on + strand, within ABID97_RS29170at 753.510 kb on - strand, within ABID97_RS29170at 753.849 kb on + strandat 753.849 kb on + strandat 753.850 kb on - strandat 754.011 kb on + strand, within ABID97_RS29175at 754.012 kb on - strand, within ABID97_RS29175at 754.632 kb on + strandat 754.762 kb on - strand, within ABID97_RS29180at 755.002 kb on - strand, within ABID97_RS29180at 755.110 kb on + strand, within ABID97_RS29180at 755.111 kb on - strand, within ABID97_RS29180at 755.111 kb on - strand, within ABID97_RS29180at 755.111 kb on - strand, within ABID97_RS29180

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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752,911 + -0.5
753,079 + ABID97_RS29170 0.25 +0.3
753,079 + ABID97_RS29170 0.25 -0.7
753,510 - ABID97_RS29170 0.70 +0.5
753,849 + -0.7
753,849 + -0.2
753,850 - -0.1
754,011 + ABID97_RS29175 0.26 +1.2
754,012 - ABID97_RS29175 0.26 +0.2
754,632 + -1.1
754,762 - ABID97_RS29180 0.18 -0.7
755,002 - ABID97_RS29180 0.42 +0.4
755,110 + ABID97_RS29180 0.53 +0.4
755,111 - ABID97_RS29180 0.53 -0.1
755,111 - ABID97_RS29180 0.53 -0.1
755,111 - ABID97_RS29180 0.53 +1.1

Or see this region's nucleotide sequence