Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28990 and ABID97_RS28995 are separated by 128 nucleotides ABID97_RS28995 and ABID97_RS29000 are separated by 76 nucleotides ABID97_RS29000 and ABID97_RS29005 are separated by 16 nucleotides ABID97_RS29005 and ABID97_RS29010 are separated by 45 nucleotides
ABID97_RS28990: ABID97_RS28990 - aspartate 1-decarboxylase, at 717,648 to 718,049
_RS28990
ABID97_RS28995: ABID97_RS28995 - dodecin, at 718,178 to 718,384
_RS28995
ABID97_RS29000: ABID97_RS29000 - YciI family protein, at 718,461 to 718,754
_RS29000
ABID97_RS29005: ABID97_RS29005 - tripartite tricarboxylate transporter substrate binding protein, at 718,771 to 719,736
_RS29005
ABID97_RS29010: ABID97_RS29010 - SMP-30/gluconolactonase/LRE family protein, at 719,782 to 720,687
_RS29010
Position (kb) 718
719
720 Strain fitness (log2 ratio) -2
-1
0
1 at 717.877 kb on + strand, within ABID97_RS28990 at 717.877 kb on + strand, within ABID97_RS28990 at 717.878 kb on - strand, within ABID97_RS28990 at 717.986 kb on - strand, within ABID97_RS28990 at 718.180 kb on - strand at 718.368 kb on + strand at 718.368 kb on + strand at 718.368 kb on + strand at 718.368 kb on + strand at 718.369 kb on - strand at 718.369 kb on - strand at 718.675 kb on + strand, within ABID97_RS29000 at 719.192 kb on + strand, within ABID97_RS29005 at 719.475 kb on - strand, within ABID97_RS29005 at 719.546 kb on + strand, within ABID97_RS29005 at 719.546 kb on + strand, within ABID97_RS29005 at 719.547 kb on - strand, within ABID97_RS29005 at 719.547 kb on - strand, within ABID97_RS29005 at 719.547 kb on - strand, within ABID97_RS29005 at 719.547 kb on - strand, within ABID97_RS29005 at 719.547 kb on - strand, within ABID97_RS29005 at 719.547 kb on - strand, within ABID97_RS29005 at 719.547 kb on - strand, within ABID97_RS29005 at 719.906 kb on + strand, within ABID97_RS29010 at 719.906 kb on + strand, within ABID97_RS29010 at 720.155 kb on + strand, within ABID97_RS29010 at 720.155 kb on + strand, within ABID97_RS29010 at 720.155 kb on + strand, within ABID97_RS29010 at 720.155 kb on + strand, within ABID97_RS29010 at 720.156 kb on - strand, within ABID97_RS29010 at 720.156 kb on - strand, within ABID97_RS29010 at 720.156 kb on - strand, within ABID97_RS29010 at 720.249 kb on - strand, within ABID97_RS29010 at 720.251 kb on + strand, within ABID97_RS29010 at 720.252 kb on - strand, within ABID97_RS29010 at 720.305 kb on + strand, within ABID97_RS29010 at 720.305 kb on + strand, within ABID97_RS29010 at 720.305 kb on + strand, within ABID97_RS29010 at 720.306 kb on - strand, within ABID97_RS29010 at 720.375 kb on - strand, within ABID97_RS29010 at 720.432 kb on - strand, within ABID97_RS29010 at 720.500 kb on + strand, within ABID97_RS29010 at 720.501 kb on - strand, within ABID97_RS29010 at 720.501 kb on - strand, within ABID97_RS29010
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 717,877 + ABID97_RS28990 0.57 -1.3 717,877 + ABID97_RS28990 0.57 -1.8 717,878 - ABID97_RS28990 0.57 +0.1 717,986 - ABID97_RS28990 0.84 -1.4 718,180 - +0.3 718,368 + +0.7 718,368 + +1.7 718,368 + +0.3 718,368 + +0.3 718,369 - +1.5 718,369 - +0.8 718,675 + ABID97_RS29000 0.73 +0.2 719,192 + ABID97_RS29005 0.44 +1.5 719,475 - ABID97_RS29005 0.73 +0.0 719,546 + ABID97_RS29005 0.80 +1.2 719,546 + ABID97_RS29005 0.80 +0.3 719,547 - ABID97_RS29005 0.80 +0.1 719,547 - ABID97_RS29005 0.80 -0.1 719,547 - ABID97_RS29005 0.80 +0.6 719,547 - ABID97_RS29005 0.80 +0.8 719,547 - ABID97_RS29005 0.80 +0.1 719,547 - ABID97_RS29005 0.80 -0.4 719,547 - ABID97_RS29005 0.80 -0.0 719,906 + ABID97_RS29010 0.14 -0.3 719,906 + ABID97_RS29010 0.14 +0.3 720,155 + ABID97_RS29010 0.41 +0.0 720,155 + ABID97_RS29010 0.41 +0.7 720,155 + ABID97_RS29010 0.41 +0.1 720,155 + ABID97_RS29010 0.41 +0.1 720,156 - ABID97_RS29010 0.41 -0.4 720,156 - ABID97_RS29010 0.41 -0.1 720,156 - ABID97_RS29010 0.41 -0.8 720,249 - ABID97_RS29010 0.52 +0.3 720,251 + ABID97_RS29010 0.52 -1.0 720,252 - ABID97_RS29010 0.52 -0.1 720,305 + ABID97_RS29010 0.58 +0.9 720,305 + ABID97_RS29010 0.58 -0.4 720,305 + ABID97_RS29010 0.58 -0.3 720,306 - ABID97_RS29010 0.58 -0.2 720,375 - ABID97_RS29010 0.65 +0.9 720,432 - ABID97_RS29010 0.72 -0.6 720,500 + ABID97_RS29010 0.79 -0.6 720,501 - ABID97_RS29010 0.79 -0.4 720,501 - ABID97_RS29010 0.79 -0.4
Or see this region's nucleotide sequence