Strain Fitness in Variovorax sp. OAS795 around ABID97_RS28745

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS28740 and ABID97_RS28745 are separated by 84 nucleotidesABID97_RS28745 and ABID97_RS28750 are separated by 2 nucleotides ABID97_RS28740: ABID97_RS28740 - NADH:flavin oxidoreductase/NADH oxidase, at 664,484 to 665,599 _RS28740 ABID97_RS28745: ABID97_RS28745 - GMC family oxidoreductase N-terminal domain-containing protein, at 665,684 to 667,282 _RS28745 ABID97_RS28750: ABID97_RS28750 - FAD-binding oxidoreductase, at 667,285 to 668,685 _RS28750 Position (kb) 665 666 667 668Strain fitness (log2 ratio) -2 -1 0 1 2at 664.758 kb on + strand, within ABID97_RS28740at 664.759 kb on - strand, within ABID97_RS28740at 665.053 kb on - strand, within ABID97_RS28740at 665.686 kb on - strandat 665.887 kb on - strand, within ABID97_RS28745at 666.199 kb on - strand, within ABID97_RS28745at 666.199 kb on - strand, within ABID97_RS28745at 666.315 kb on + strand, within ABID97_RS28745at 666.417 kb on + strand, within ABID97_RS28745at 666.417 kb on + strand, within ABID97_RS28745at 666.417 kb on + strand, within ABID97_RS28745at 666.417 kb on + strand, within ABID97_RS28745at 666.463 kb on - strand, within ABID97_RS28745at 666.739 kb on - strand, within ABID97_RS28745at 666.999 kb on + strand, within ABID97_RS28745at 666.999 kb on + strand, within ABID97_RS28745at 666.999 kb on + strand, within ABID97_RS28745at 667.000 kb on - strand, within ABID97_RS28745at 667.266 kb on + strandat 667.266 kb on + strandat 667.266 kb on + strandat 667.266 kb on + strandat 667.266 kb on + strandat 667.267 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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664,758 + ABID97_RS28740 0.25 +0.3
664,759 - ABID97_RS28740 0.25 -0.3
665,053 - ABID97_RS28740 0.51 -0.1
665,686 - +2.1
665,887 - ABID97_RS28745 0.13 +0.9
666,199 - ABID97_RS28745 0.32 +0.0
666,199 - ABID97_RS28745 0.32 +0.3
666,315 + ABID97_RS28745 0.39 -0.4
666,417 + ABID97_RS28745 0.46 -0.4
666,417 + ABID97_RS28745 0.46 -2.0
666,417 + ABID97_RS28745 0.46 -0.0
666,417 + ABID97_RS28745 0.46 -0.5
666,463 - ABID97_RS28745 0.49 -0.3
666,739 - ABID97_RS28745 0.66 -0.8
666,999 + ABID97_RS28745 0.82 -0.2
666,999 + ABID97_RS28745 0.82 -0.9
666,999 + ABID97_RS28745 0.82 -0.3
667,000 - ABID97_RS28745 0.82 -0.7
667,266 + +0.2
667,266 + -1.1
667,266 + -0.1
667,266 + +0.2
667,266 + -0.3
667,267 - -0.4

Or see this region's nucleotide sequence