Strain Fitness in Variovorax sp. OAS795 around ABID97_RS27820

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS27810 and ABID97_RS27815 are separated by 4 nucleotidesABID97_RS27815 and ABID97_RS27820 are separated by 15 nucleotidesABID97_RS27820 and ABID97_RS27825 overlap by 4 nucleotidesABID97_RS27825 and ABID97_RS27830 overlap by 46 nucleotides ABID97_RS27810: ABID97_RS27810 - ABC transporter ATP-binding protein, at 482,798 to 483,562 _RS27810 ABID97_RS27815: ABID97_RS27815 - ABC transporter ATP-binding protein, at 483,567 to 484,349 _RS27815 ABID97_RS27820: ABID97_RS27820 - ABC transporter substrate-binding protein, at 484,365 to 485,564 _RS27820 ABID97_RS27825: ABID97_RS27825 - AMP-binding protein, at 485,561 to 486,232 _RS27825 ABID97_RS27830: ABID97_RS27830 - AMP-binding protein, at 486,187 to 487,341 _RS27830 Position (kb) 484 485 486Strain fitness (log2 ratio) -1 0 1at 483.924 kb on + strand, within ABID97_RS27815at 484.908 kb on + strand, within ABID97_RS27820at 485.332 kb on - strand, within ABID97_RS27820at 485.332 kb on - strand, within ABID97_RS27820at 485.443 kb on - strand, within ABID97_RS27820at 485.712 kb on - strand, within ABID97_RS27825at 485.861 kb on + strand, within ABID97_RS27825

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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483,924 + ABID97_RS27815 0.46 -0.5
484,908 + ABID97_RS27820 0.45 +1.1
485,332 - ABID97_RS27820 0.81 -0.2
485,332 - ABID97_RS27820 0.81 -0.6
485,443 - ABID97_RS27820 0.90 -0.9
485,712 - ABID97_RS27825 0.22 -0.2
485,861 + ABID97_RS27825 0.45 -0.6

Or see this region's nucleotide sequence