Strain Fitness in Variovorax sp. OAS795 around ABID97_RS27625

Experiment: D-Mannose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS27615 and ABID97_RS27620 are separated by 10 nucleotidesABID97_RS27620 and ABID97_RS27625 are separated by 35 nucleotidesABID97_RS27625 and ABID97_RS27630 are separated by 77 nucleotidesABID97_RS27630 and ABID97_RS27635 are separated by 113 nucleotides ABID97_RS27615: ABID97_RS27615 - class I adenylate-forming enzyme family protein, at 442,417 to 443,898 _RS27615 ABID97_RS27620: ABID97_RS27620 - crotonase/enoyl-CoA hydratase family protein, at 443,909 to 444,721 _RS27620 ABID97_RS27625: ABID97_RS27625 - NAD(P)-binding domain-containing protein, at 444,757 to 445,656 _RS27625 ABID97_RS27630: ABID97_RS27630 - AraC family transcriptional regulator, at 445,734 to 446,495 _RS27630 ABID97_RS27635: ABID97_RS27635 - NAD(P)H-dependent oxidoreductase, at 446,609 to 447,427 _RS27635 Position (kb) 444 445 446Strain fitness (log2 ratio) -1 0 1at 443.896 kb on + strandat 444.720 kb on - strandat 445.127 kb on - strand, within ABID97_RS27625at 445.592 kb on + strandat 445.660 kb on - strandat 445.824 kb on + strand, within ABID97_RS27630at 446.016 kb on + strand, within ABID97_RS27630at 446.363 kb on + strand, within ABID97_RS27630

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
remove
443,896 + -0.3
444,720 - -0.2
445,127 - ABID97_RS27625 0.41 -1.5
445,592 + -0.3
445,660 - -0.4
445,824 + ABID97_RS27630 0.12 +0.1
446,016 + ABID97_RS27630 0.37 -0.8
446,363 + ABID97_RS27630 0.83 -0.4

Or see this region's nucleotide sequence