Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS27325 and ABID97_RS27330 overlap by 4 nucleotides ABID97_RS27330 and ABID97_RS27335 overlap by 4 nucleotides
ABID97_RS27325: ABID97_RS27325 - glucoamylase family protein, at 379,866 to 381,161
_RS27325
ABID97_RS27330: ABID97_RS27330 - glycoside hydrolase family 15 protein, at 381,158 to 382,543
_RS27330
ABID97_RS27335: ABID97_RS27335 - ABC transporter ATP-binding protein/permease, at 382,540 to 384,300
_RS27335
Position (kb) 381
382
383 Strain fitness (log2 ratio) -1
0
1 at 380.304 kb on + strand, within ABID97_RS27325 at 380.304 kb on + strand, within ABID97_RS27325 at 380.412 kb on + strand, within ABID97_RS27325 at 380.412 kb on + strand, within ABID97_RS27325 at 380.584 kb on - strand, within ABID97_RS27325 at 380.643 kb on + strand, within ABID97_RS27325 at 380.686 kb on - strand, within ABID97_RS27325 at 380.695 kb on - strand, within ABID97_RS27325 at 380.887 kb on - strand, within ABID97_RS27325 at 381.009 kb on + strand, within ABID97_RS27325 at 381.567 kb on - strand, within ABID97_RS27330 at 381.818 kb on + strand, within ABID97_RS27330 at 381.818 kb on + strand, within ABID97_RS27330 at 381.819 kb on - strand, within ABID97_RS27330 at 381.851 kb on + strand, within ABID97_RS27330 at 381.852 kb on - strand, within ABID97_RS27330 at 381.854 kb on + strand, within ABID97_RS27330 at 381.855 kb on - strand, within ABID97_RS27330 at 381.981 kb on - strand, within ABID97_RS27330 at 382.271 kb on - strand, within ABID97_RS27330 at 382.736 kb on - strand, within ABID97_RS27335 at 382.775 kb on + strand, within ABID97_RS27335 at 383.453 kb on - strand, within ABID97_RS27335 at 383.453 kb on - strand, within ABID97_RS27335
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 380,304 + ABID97_RS27325 0.34 +0.0 380,304 + ABID97_RS27325 0.34 +0.5 380,412 + ABID97_RS27325 0.42 +0.4 380,412 + ABID97_RS27325 0.42 -0.1 380,584 - ABID97_RS27325 0.55 -0.8 380,643 + ABID97_RS27325 0.60 +0.7 380,686 - ABID97_RS27325 0.63 +1.0 380,695 - ABID97_RS27325 0.64 -0.1 380,887 - ABID97_RS27325 0.79 +0.2 381,009 + ABID97_RS27325 0.88 -0.5 381,567 - ABID97_RS27330 0.30 -1.1 381,818 + ABID97_RS27330 0.48 +0.2 381,818 + ABID97_RS27330 0.48 -0.5 381,819 - ABID97_RS27330 0.48 -0.3 381,851 + ABID97_RS27330 0.50 +0.0 381,852 - ABID97_RS27330 0.50 -0.7 381,854 + ABID97_RS27330 0.50 +0.1 381,855 - ABID97_RS27330 0.50 -0.1 381,981 - ABID97_RS27330 0.59 -0.3 382,271 - ABID97_RS27330 0.80 +0.2 382,736 - ABID97_RS27335 0.11 -0.5 382,775 + ABID97_RS27335 0.13 +0.3 383,453 - ABID97_RS27335 0.52 +0.2 383,453 - ABID97_RS27335 0.52 +0.2
Or see this region's nucleotide sequence