Strain Fitness in Variovorax sp. OAS795 around ABID97_RS26705

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS26700 and ABID97_RS26705 overlap by 4 nucleotidesABID97_RS26705 and ABID97_RS26710 are separated by 91 nucleotides ABID97_RS26700: ABID97_RS26700 - Ku protein, at 264,123 to 265,064 _RS26700 ABID97_RS26705: ABID97_RS26705 - tetratricopeptide repeat protein, at 265,061 to 265,903 _RS26705 ABID97_RS26710: ABID97_RS26710 - Ku protein, at 265,995 to 266,933 _RS26710 Position (kb) 265 266Strain fitness (log2 ratio) -2 -1 0 1at 264.267 kb on + strand, within ABID97_RS26700at 264.267 kb on + strand, within ABID97_RS26700at 264.268 kb on - strand, within ABID97_RS26700at 264.447 kb on + strand, within ABID97_RS26700at 264.448 kb on - strand, within ABID97_RS26700at 264.462 kb on + strand, within ABID97_RS26700at 264.465 kb on + strand, within ABID97_RS26700at 264.466 kb on - strand, within ABID97_RS26700at 264.466 kb on - strand, within ABID97_RS26700at 264.499 kb on - strand, within ABID97_RS26700at 264.739 kb on - strand, within ABID97_RS26700at 265.605 kb on - strand, within ABID97_RS26705at 265.665 kb on - strand, within ABID97_RS26705at 265.709 kb on + strand, within ABID97_RS26705at 265.710 kb on - strand, within ABID97_RS26705at 265.767 kb on - strand, within ABID97_RS26705at 266.218 kb on - strand, within ABID97_RS26710at 266.254 kb on - strand, within ABID97_RS26710at 266.334 kb on + strand, within ABID97_RS26710at 266.337 kb on + strand, within ABID97_RS26710at 266.338 kb on - strand, within ABID97_RS26710at 266.370 kb on + strand, within ABID97_RS26710at 266.370 kb on + strand, within ABID97_RS26710

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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264,267 + ABID97_RS26700 0.15 -1.8
264,267 + ABID97_RS26700 0.15 -0.1
264,268 - ABID97_RS26700 0.15 -0.6
264,447 + ABID97_RS26700 0.34 +1.5
264,448 - ABID97_RS26700 0.35 +0.2
264,462 + ABID97_RS26700 0.36 -0.2
264,465 + ABID97_RS26700 0.36 +0.4
264,466 - ABID97_RS26700 0.36 +0.1
264,466 - ABID97_RS26700 0.36 -0.5
264,499 - ABID97_RS26700 0.40 -0.7
264,739 - ABID97_RS26700 0.65 -0.4
265,605 - ABID97_RS26705 0.65 -0.1
265,665 - ABID97_RS26705 0.72 -0.4
265,709 + ABID97_RS26705 0.77 -0.7
265,710 - ABID97_RS26705 0.77 +0.1
265,767 - ABID97_RS26705 0.84 -0.3
266,218 - ABID97_RS26710 0.24 -0.7
266,254 - ABID97_RS26710 0.28 +0.2
266,334 + ABID97_RS26710 0.36 +0.4
266,337 + ABID97_RS26710 0.36 -0.6
266,338 - ABID97_RS26710 0.37 +0.0
266,370 + ABID97_RS26710 0.40 -0.0
266,370 + ABID97_RS26710 0.40 +0.0

Or see this region's nucleotide sequence