Strain Fitness in Variovorax sp. OAS795 around ABID97_RS26690

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS26685 and ABID97_RS26690 are separated by 142 nucleotidesABID97_RS26690 and ABID97_RS26695 are separated by 46 nucleotides ABID97_RS26685: ABID97_RS26685 - LysR substrate-binding domain-containing protein, at 260,399 to 261,334 _RS26685 ABID97_RS26690: ABID97_RS26690 - tripartite tricarboxylate transporter substrate binding protein, at 261,477 to 262,490 _RS26690 ABID97_RS26695: ABID97_RS26695 - M81 family metallopeptidase, at 262,537 to 264,027 _RS26695 Position (kb) 261 262 263Strain fitness (log2 ratio) -1 0 1at 260.730 kb on + strand, within ABID97_RS26685at 261.126 kb on + strand, within ABID97_RS26685at 261.303 kb on + strandat 261.764 kb on + strand, within ABID97_RS26690at 261.993 kb on + strand, within ABID97_RS26690at 262.053 kb on + strand, within ABID97_RS26690at 262.429 kb on - strandat 262.429 kb on - strandat 262.843 kb on + strand, within ABID97_RS26695at 262.843 kb on + strand, within ABID97_RS26695at 263.134 kb on - strand, within ABID97_RS26695at 263.340 kb on - strand, within ABID97_RS26695

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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260,730 + ABID97_RS26685 0.35 -0.8
261,126 + ABID97_RS26685 0.78 -0.1
261,303 + -0.5
261,764 + ABID97_RS26690 0.28 -0.1
261,993 + ABID97_RS26690 0.51 -0.8
262,053 + ABID97_RS26690 0.57 -1.2
262,429 - +0.4
262,429 - -0.1
262,843 + ABID97_RS26695 0.21 +0.1
262,843 + ABID97_RS26695 0.21 +0.5
263,134 - ABID97_RS26695 0.40 -0.2
263,340 - ABID97_RS26695 0.54 -0.2

Or see this region's nucleotide sequence