Strain Fitness in Variovorax sp. OAS795 around ABID97_RS26025

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS26020 and ABID97_RS26025 are separated by 11 nucleotidesABID97_RS26025 and ABID97_RS26030 are separated by 21 nucleotidesABID97_RS26030 and ABID97_RS26035 are separated by 19 nucleotides ABID97_RS26020: ABID97_RS26020 - branched-chain amino acid ABC transporter ATP-binding protein/permease, at 128,212 to 130,185 _RS26020 ABID97_RS26025: ABID97_RS26025 - ABC transporter ATP-binding protein, at 130,197 to 130,919 _RS26025 ABID97_RS26030: ABID97_RS26030 - DUF1330 domain-containing protein, at 130,941 to 131,267 _RS26030 ABID97_RS26035: ABID97_RS26035 - GMC family oxidoreductase N-terminal domain-containing protein, at 131,287 to 132,954 _RS26035 Position (kb) 130 131Strain fitness (log2 ratio) -1 0 1at 129.241 kb on + strand, within ABID97_RS26020at 131.221 kb on - strand, within ABID97_RS26030

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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129,241 + ABID97_RS26020 0.52 -0.0
131,221 - ABID97_RS26030 0.86 +0.6

Or see this region's nucleotide sequence