Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS22855 and ABID97_RS22860 overlap by 7 nucleotides ABID97_RS22860 and ABID97_RS22865 are separated by 10 nucleotides ABID97_RS22865 and ABID97_RS22870 overlap by 4 nucleotides
ABID97_RS22855: ABID97_RS22855 - D-aminoacylase, at 4,731,764 to 4,733,251
_RS22855
ABID97_RS22860: ABID97_RS22860 - MurR/RpiR family transcriptional regulator, at 4,733,245 to 4,734,156
_RS22860
ABID97_RS22865: ABID97_RS22865 - amino acid deaminase, at 4,734,167 to 4,735,483
_RS22865
ABID97_RS22870: ABID97_RS22870 - ABC transporter ATP-binding protein, at 4,735,480 to 4,736,457
_RS22870
Position (kb) 4734
4735
4736 Strain fitness (log2 ratio) -1
0
1 at 4733.430 kb on - strand, within ABID97_RS22860 at 4733.751 kb on - strand, within ABID97_RS22860 at 4733.751 kb on - strand, within ABID97_RS22860 at 4734.201 kb on + strand at 4734.328 kb on - strand, within ABID97_RS22865 at 4734.582 kb on + strand, within ABID97_RS22865 at 4734.606 kb on + strand, within ABID97_RS22865 at 4734.607 kb on - strand, within ABID97_RS22865 at 4734.786 kb on + strand, within ABID97_RS22865 at 4734.787 kb on - strand, within ABID97_RS22865 at 4734.787 kb on - strand, within ABID97_RS22865 at 4735.526 kb on + strand at 4735.527 kb on - strand at 4735.781 kb on + strand, within ABID97_RS22870 at 4735.781 kb on + strand, within ABID97_RS22870 at 4735.809 kb on - strand, within ABID97_RS22870
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 4,733,430 - ABID97_RS22860 0.20 +0.4 4,733,751 - ABID97_RS22860 0.55 -1.7 4,733,751 - ABID97_RS22860 0.55 -0.2 4,734,201 + -1.1 4,734,328 - ABID97_RS22865 0.12 +0.5 4,734,582 + ABID97_RS22865 0.32 +0.6 4,734,606 + ABID97_RS22865 0.33 +0.2 4,734,607 - ABID97_RS22865 0.33 +0.0 4,734,786 + ABID97_RS22865 0.47 -0.5 4,734,787 - ABID97_RS22865 0.47 +0.1 4,734,787 - ABID97_RS22865 0.47 +0.7 4,735,526 + +0.1 4,735,527 - -0.2 4,735,781 + ABID97_RS22870 0.31 -1.6 4,735,781 + ABID97_RS22870 0.31 +0.2 4,735,809 - ABID97_RS22870 0.34 -0.8
Or see this region's nucleotide sequence