Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS21075 and ABID97_RS21080 are separated by 20 nucleotides ABID97_RS21080 and ABID97_RS21085 are separated by 82 nucleotides ABID97_RS21085 and ABID97_RS21090 are separated by 220 nucleotides ABID97_RS21090 and ABID97_RS21095 are separated by 41 nucleotides
ABID97_RS21075: ABID97_RS21075 - NAD(P)/FAD-dependent oxidoreductase, at 4,351,106 to 4,352,449
_RS21075
ABID97_RS21080: ABID97_RS21080 - thermonuclease family protein, at 4,352,470 to 4,352,988
_RS21080
ABID97_RS21085: ABID97_RS21085 - long-chain fatty acid--CoA ligase, at 4,353,071 to 4,354,771
_RS21085
ABID97_RS21090: ABID97_RS21090 - OsmC family protein, at 4,354,992 to 4,355,432
_RS21090
ABID97_RS21095: ABID97_RS21095 - tripartite tricarboxylate transporter substrate binding protein, at 4,355,474 to 4,356,466
_RS21095
Position (kb) 4353
4354
4355 Strain fitness (log2 ratio) -2
-1
0
1 at 4352.331 kb on - strand at 4352.331 kb on - strand at 4352.387 kb on + strand at 4352.796 kb on - strand, within ABID97_RS21080 at 4352.853 kb on - strand, within ABID97_RS21080 at 4352.853 kb on - strand, within ABID97_RS21080 at 4353.002 kb on + strand at 4353.002 kb on + strand at 4353.002 kb on + strand at 4353.002 kb on + strand at 4353.002 kb on + strand at 4353.002 kb on + strand at 4353.002 kb on + strand at 4353.003 kb on - strand at 4353.003 kb on - strand at 4353.177 kb on + strand at 4353.414 kb on + strand, within ABID97_RS21085 at 4353.414 kb on + strand, within ABID97_RS21085 at 4353.696 kb on + strand, within ABID97_RS21085 at 4353.708 kb on + strand, within ABID97_RS21085 at 4353.721 kb on - strand, within ABID97_RS21085 at 4353.802 kb on - strand, within ABID97_RS21085 at 4353.802 kb on - strand, within ABID97_RS21085 at 4354.117 kb on - strand, within ABID97_RS21085 at 4354.428 kb on + strand, within ABID97_RS21085 at 4354.428 kb on + strand, within ABID97_RS21085 at 4354.428 kb on + strand, within ABID97_RS21085 at 4354.428 kb on + strand, within ABID97_RS21085 at 4354.428 kb on + strand, within ABID97_RS21085 at 4354.428 kb on + strand, within ABID97_RS21085 at 4354.429 kb on - strand, within ABID97_RS21085 at 4354.429 kb on - strand, within ABID97_RS21085 at 4355.441 kb on + strand at 4355.442 kb on - strand at 4355.690 kb on + strand, within ABID97_RS21095 at 4355.691 kb on - strand, within ABID97_RS21095
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 4,352,331 - +0.1 4,352,331 - -0.4 4,352,387 + +0.1 4,352,796 - ABID97_RS21080 0.63 +1.1 4,352,853 - ABID97_RS21080 0.74 -0.1 4,352,853 - ABID97_RS21080 0.74 +0.1 4,353,002 + -2.0 4,353,002 + +1.3 4,353,002 + +0.7 4,353,002 + +0.4 4,353,002 + -0.3 4,353,002 + -0.4 4,353,002 + -0.1 4,353,003 - -0.1 4,353,003 - -0.2 4,353,177 + +0.1 4,353,414 + ABID97_RS21085 0.20 -0.1 4,353,414 + ABID97_RS21085 0.20 -1.0 4,353,696 + ABID97_RS21085 0.37 -0.3 4,353,708 + ABID97_RS21085 0.37 -0.3 4,353,721 - ABID97_RS21085 0.38 +1.1 4,353,802 - ABID97_RS21085 0.43 +0.0 4,353,802 - ABID97_RS21085 0.43 +0.3 4,354,117 - ABID97_RS21085 0.61 -0.9 4,354,428 + ABID97_RS21085 0.80 -0.4 4,354,428 + ABID97_RS21085 0.80 +0.0 4,354,428 + ABID97_RS21085 0.80 -1.1 4,354,428 + ABID97_RS21085 0.80 -0.1 4,354,428 + ABID97_RS21085 0.80 -0.9 4,354,428 + ABID97_RS21085 0.80 +0.2 4,354,429 - ABID97_RS21085 0.80 -0.6 4,354,429 - ABID97_RS21085 0.80 -0.1 4,355,441 + -0.7 4,355,442 - -1.0 4,355,690 + ABID97_RS21095 0.22 -0.4 4,355,691 - ABID97_RS21095 0.22 +0.6
Or see this region's nucleotide sequence