Strain Fitness in Variovorax sp. OAS795 around ABID97_RS20025

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS20020 and ABID97_RS20025 are separated by 124 nucleotidesABID97_RS20025 and ABID97_RS20030 are separated by 2 nucleotidesABID97_RS20030 and ABID97_RS20035 are separated by 14 nucleotides ABID97_RS20020: ABID97_RS20020 - LacI family DNA-binding transcriptional regulator, at 4,138,657 to 4,139,682 _RS20020 ABID97_RS20025: ABID97_RS20025 - D-glycerate dehydrogenase, at 4,139,807 to 4,140,790 _RS20025 ABID97_RS20030: ABID97_RS20030 - sugar kinase, at 4,140,793 to 4,141,746 _RS20030 ABID97_RS20035: ABID97_RS20035 - glutamine ABC transporter ATP-binding protein, at 4,141,761 to 4,142,504 _RS20035 Position (kb) 4139 4140 4141Strain fitness (log2 ratio) -2 -1 0 1 2at 4139.123 kb on + strand, within ABID97_RS20020at 4139.123 kb on + strand, within ABID97_RS20020at 4140.552 kb on + strand, within ABID97_RS20025at 4140.553 kb on - strand, within ABID97_RS20025at 4140.782 kb on - strandat 4140.851 kb on - strandat 4141.028 kb on + strand, within ABID97_RS20030at 4141.028 kb on + strand, within ABID97_RS20030at 4141.029 kb on - strand, within ABID97_RS20030at 4141.029 kb on - strand, within ABID97_RS20030at 4141.029 kb on - strand, within ABID97_RS20030at 4141.032 kb on - strand, within ABID97_RS20030at 4141.419 kb on - strand, within ABID97_RS20030at 4141.541 kb on + strand, within ABID97_RS20030at 4141.542 kb on - strand, within ABID97_RS20030

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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4,139,123 + ABID97_RS20020 0.45 -0.9
4,139,123 + ABID97_RS20020 0.45 -0.6
4,140,552 + ABID97_RS20025 0.76 -2.7
4,140,553 - ABID97_RS20025 0.76 -1.9
4,140,782 - -2.0
4,140,851 - +1.9
4,141,028 + ABID97_RS20030 0.25 -0.7
4,141,028 + ABID97_RS20030 0.25 -0.5
4,141,029 - ABID97_RS20030 0.25 +0.2
4,141,029 - ABID97_RS20030 0.25 -0.0
4,141,029 - ABID97_RS20030 0.25 -0.3
4,141,032 - ABID97_RS20030 0.25 -0.0
4,141,419 - ABID97_RS20030 0.66 -0.7
4,141,541 + ABID97_RS20030 0.78 -1.0
4,141,542 - ABID97_RS20030 0.79 -1.2

Or see this region's nucleotide sequence