Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS20020 and ABID97_RS20025 are separated by 124 nucleotides ABID97_RS20025 and ABID97_RS20030 are separated by 2 nucleotides ABID97_RS20030 and ABID97_RS20035 are separated by 14 nucleotides
ABID97_RS20020: ABID97_RS20020 - LacI family DNA-binding transcriptional regulator, at 4,138,657 to 4,139,682
_RS20020
ABID97_RS20025: ABID97_RS20025 - D-glycerate dehydrogenase, at 4,139,807 to 4,140,790
_RS20025
ABID97_RS20030: ABID97_RS20030 - sugar kinase, at 4,140,793 to 4,141,746
_RS20030
ABID97_RS20035: ABID97_RS20035 - glutamine ABC transporter ATP-binding protein, at 4,141,761 to 4,142,504
_RS20035
Position (kb)
4139
4140
4141 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4139.123 kb on + strand, within ABID97_RS20020 at 4139.123 kb on + strand, within ABID97_RS20020 at 4140.552 kb on + strand, within ABID97_RS20025 at 4140.553 kb on - strand, within ABID97_RS20025 at 4140.782 kb on - strand at 4140.851 kb on - strand at 4141.028 kb on + strand, within ABID97_RS20030 at 4141.028 kb on + strand, within ABID97_RS20030 at 4141.029 kb on - strand, within ABID97_RS20030 at 4141.029 kb on - strand, within ABID97_RS20030 at 4141.029 kb on - strand, within ABID97_RS20030 at 4141.032 kb on - strand, within ABID97_RS20030 at 4141.419 kb on - strand, within ABID97_RS20030 at 4141.541 kb on + strand, within ABID97_RS20030 at 4141.542 kb on - strand, within ABID97_RS20030
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 4,139,123 + ABID97_RS20020 0.45 -0.9 4,139,123 + ABID97_RS20020 0.45 -0.6 4,140,552 + ABID97_RS20025 0.76 -2.7 4,140,553 - ABID97_RS20025 0.76 -1.9 4,140,782 - -2.0 4,140,851 - +1.9 4,141,028 + ABID97_RS20030 0.25 -0.7 4,141,028 + ABID97_RS20030 0.25 -0.5 4,141,029 - ABID97_RS20030 0.25 +0.2 4,141,029 - ABID97_RS20030 0.25 -0.0 4,141,029 - ABID97_RS20030 0.25 -0.3 4,141,032 - ABID97_RS20030 0.25 -0.0 4,141,419 - ABID97_RS20030 0.66 -0.7 4,141,541 + ABID97_RS20030 0.78 -1.0 4,141,542 - ABID97_RS20030 0.79 -1.2
Or see this region's nucleotide sequence