Strain Fitness in Variovorax sp. OAS795 around ABID97_RS18820

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS18810 and ABID97_RS18815 are separated by 10 nucleotidesABID97_RS18815 and ABID97_RS18820 are separated by 13 nucleotidesABID97_RS18820 and ABID97_RS18825 are separated by 19 nucleotidesABID97_RS18825 and ABID97_RS18830 are separated by 2 nucleotides ABID97_RS18810: ABID97_RS18810 - cupin domain-containing protein, at 3,874,477 to 3,875,553 _RS18810 ABID97_RS18815: ABID97_RS18815 - fumarylacetoacetate hydrolase family protein, at 3,875,564 to 3,876,451 _RS18815 ABID97_RS18820: ABID97_RS18820 - PrpF domain-containing protein, at 3,876,465 to 3,877,601 _RS18820 ABID97_RS18825: ABID97_RS18825 - tripartite tricarboxylate transporter substrate binding protein, at 3,877,621 to 3,878,589 _RS18825 ABID97_RS18830: ABID97_RS18830 - FCD domain-containing protein, at 3,878,592 to 3,879,305 _RS18830 Position (kb) 3876 3877 3878Strain fitness (log2 ratio) -1 0 1at 3876.319 kb on - strand, within ABID97_RS18815at 3876.319 kb on - strand, within ABID97_RS18815at 3876.319 kb on - strand, within ABID97_RS18815at 3876.635 kb on - strand, within ABID97_RS18820at 3876.739 kb on - strand, within ABID97_RS18820at 3876.739 kb on - strand, within ABID97_RS18820at 3878.077 kb on + strand, within ABID97_RS18825at 3878.157 kb on + strand, within ABID97_RS18825at 3878.165 kb on - strand, within ABID97_RS18825

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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3,876,319 - ABID97_RS18815 0.85 -0.2
3,876,319 - ABID97_RS18815 0.85 +0.8
3,876,319 - ABID97_RS18815 0.85 -0.7
3,876,635 - ABID97_RS18820 0.15 -1.3
3,876,739 - ABID97_RS18820 0.24 +0.6
3,876,739 - ABID97_RS18820 0.24 -0.5
3,878,077 + ABID97_RS18825 0.47 -0.6
3,878,157 + ABID97_RS18825 0.55 -0.3
3,878,165 - ABID97_RS18825 0.56 -0.3

Or see this region's nucleotide sequence