Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS18645 and ABID97_RS18650 are separated by 162 nucleotides ABID97_RS18650 and ABID97_RS18655 are separated by 166 nucleotides ABID97_RS18655 and ABID97_RS18660 are separated by 100 nucleotides ABID97_RS18660 and ABID97_RS18665 are separated by 42 nucleotides
ABID97_RS18645: ABID97_RS18645 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 3,842,950 to 3,844,239
_RS18645
ABID97_RS18650: ABID97_RS18650 - 2Fe-2S iron-sulfur cluster-binding protein, at 3,844,402 to 3,844,722
_RS18650
ABID97_RS18655: ABID97_RS18655 - LysR family transcriptional regulator, at 3,844,889 to 3,845,839
_RS18655
ABID97_RS18660: ABID97_RS18660 - SDR family oxidoreductase, at 3,845,940 to 3,846,683
_RS18660
ABID97_RS18665: ABID97_RS18665 - tripartite tricarboxylate transporter substrate binding protein, at 3,846,726 to 3,847,712
_RS18665
Position (kb)
3844
3845
3846 Strain fitness (log2 ratio)
-1
0
1 at 3843.933 kb on + strand, within ABID97_RS18645 at 3843.934 kb on - strand, within ABID97_RS18645 at 3844.139 kb on + strand at 3844.140 kb on - strand at 3844.391 kb on + strand at 3844.772 kb on - strand at 3845.458 kb on - strand, within ABID97_RS18655 at 3845.466 kb on - strand, within ABID97_RS18655 at 3845.546 kb on - strand, within ABID97_RS18655 at 3845.724 kb on - strand, within ABID97_RS18655 at 3845.902 kb on + strand at 3845.903 kb on - strand at 3846.044 kb on - strand, within ABID97_RS18660 at 3846.044 kb on - strand, within ABID97_RS18660 at 3846.044 kb on - strand, within ABID97_RS18660 at 3846.404 kb on - strand, within ABID97_RS18660
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 3,843,933 + ABID97_RS18645 0.76 -0.1 3,843,934 - ABID97_RS18645 0.76 +0.1 3,844,139 + +0.4 3,844,140 - +0.0 3,844,391 + +0.2 3,844,772 - -0.7 3,845,458 - ABID97_RS18655 0.60 -1.3 3,845,466 - ABID97_RS18655 0.61 -0.2 3,845,546 - ABID97_RS18655 0.69 -0.2 3,845,724 - ABID97_RS18655 0.88 -0.6 3,845,902 + +0.5 3,845,903 - -1.4 3,846,044 - ABID97_RS18660 0.14 -0.5 3,846,044 - ABID97_RS18660 0.14 -0.7 3,846,044 - ABID97_RS18660 0.14 -0.4 3,846,404 - ABID97_RS18660 0.62 +0.1
Or see this region's nucleotide sequence