Strain Fitness in Variovorax sp. OAS795 around ABID97_RS17035

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS17025 and ABID97_RS17030 are separated by 81 nucleotidesABID97_RS17030 and ABID97_RS17035 overlap by 4 nucleotidesABID97_RS17035 and ABID97_RS17040 overlap by 4 nucleotidesABID97_RS17040 and ABID97_RS17045 are separated by 63 nucleotides ABID97_RS17025: ABID97_RS17025 - acyl-CoA dehydrogenase family protein, at 3,518,116 to 3,519,387 _RS17025 ABID97_RS17030: ABID97_RS17030 - GNAT family N-acetyltransferase, at 3,519,469 to 3,519,957 _RS17030 ABID97_RS17035: ABID97_RS17035 - phosphoglucosamine mutase, at 3,519,954 to 3,521,291 _RS17035 ABID97_RS17040: ABID97_RS17040 - dihydropteroate synthase, at 3,521,288 to 3,522,187 _RS17040 ABID97_RS17045: ABID97_RS17045 - ATP-dependent zinc metalloprotease FtsH, at 3,522,251 to 3,524,167 _RS17045 Position (kb) 3519 3520 3521 3522Strain fitness (log2 ratio) -1 0 1at 3519.251 kb on - strand, within ABID97_RS17025at 3519.341 kb on - strandat 3519.875 kb on + strand, within ABID97_RS17030

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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3,519,251 - ABID97_RS17025 0.89 -0.3
3,519,341 - +1.2
3,519,875 + ABID97_RS17030 0.83 +0.1

Or see this region's nucleotide sequence