Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS16105 and ABID97_RS16110 are separated by 8 nucleotides ABID97_RS16110 and ABID97_RS16115 overlap by 4 nucleotides ABID97_RS16115 and ABID97_RS16120 are separated by 5 nucleotides ABID97_RS16120 and ABID97_RS16125 are separated by 48 nucleotides
ABID97_RS16105: ABID97_RS16105 - type IV pilin protein, at 3,334,234 to 3,334,638
_RS16105
ABID97_RS16110: ABID97_RS16110 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 3,334,647 to 3,335,225
_RS16110
ABID97_RS16115: ABID97_RS16115 - PilW family protein, at 3,335,222 to 3,336,394
_RS16115
ABID97_RS16120: ABID97_RS16120 - hypothetical protein, at 3,336,400 to 3,336,951
_RS16120
ABID97_RS16125: ABID97_RS16125 - PilC/PilY family type IV pilus protein, at 3,337,000 to 3,340,119
_RS16125
Position (kb) 3335
3336
3337 Strain fitness (log2 ratio) -1
0
1
2 at 3334.340 kb on - strand, within ABID97_RS16105 at 3334.340 kb on - strand, within ABID97_RS16105 at 3334.340 kb on - strand, within ABID97_RS16105 at 3334.349 kb on - strand, within ABID97_RS16105 at 3334.349 kb on - strand, within ABID97_RS16105 at 3334.501 kb on + strand, within ABID97_RS16105 at 3334.501 kb on + strand, within ABID97_RS16105 at 3334.502 kb on - strand, within ABID97_RS16105 at 3334.502 kb on - strand, within ABID97_RS16105 at 3334.502 kb on - strand, within ABID97_RS16105 at 3334.502 kb on - strand, within ABID97_RS16105 at 3334.507 kb on + strand, within ABID97_RS16105 at 3334.507 kb on + strand, within ABID97_RS16105 at 3334.508 kb on - strand, within ABID97_RS16105 at 3334.782 kb on + strand, within ABID97_RS16110 at 3334.783 kb on - strand, within ABID97_RS16110 at 3334.783 kb on - strand, within ABID97_RS16110 at 3334.860 kb on + strand, within ABID97_RS16110 at 3334.861 kb on - strand, within ABID97_RS16110 at 3335.044 kb on - strand, within ABID97_RS16110 at 3335.122 kb on - strand, within ABID97_RS16110 at 3335.487 kb on - strand, within ABID97_RS16115 at 3335.487 kb on - strand, within ABID97_RS16115 at 3335.597 kb on + strand, within ABID97_RS16115 at 3335.598 kb on - strand, within ABID97_RS16115 at 3335.634 kb on - strand, within ABID97_RS16115 at 3335.694 kb on + strand, within ABID97_RS16115 at 3335.694 kb on + strand, within ABID97_RS16115 at 3335.694 kb on + strand, within ABID97_RS16115 at 3335.694 kb on + strand, within ABID97_RS16115 at 3335.694 kb on + strand, within ABID97_RS16115 at 3335.694 kb on + strand, within ABID97_RS16115 at 3335.695 kb on - strand, within ABID97_RS16115 at 3335.695 kb on - strand, within ABID97_RS16115 at 3335.695 kb on - strand, within ABID97_RS16115 at 3335.695 kb on - strand, within ABID97_RS16115 at 3335.695 kb on - strand, within ABID97_RS16115 at 3335.769 kb on - strand, within ABID97_RS16115 at 3335.897 kb on + strand, within ABID97_RS16115 at 3335.897 kb on + strand, within ABID97_RS16115 at 3335.897 kb on + strand, within ABID97_RS16115 at 3335.897 kb on + strand, within ABID97_RS16115 at 3335.897 kb on + strand, within ABID97_RS16115 at 3335.897 kb on + strand, within ABID97_RS16115 at 3336.081 kb on - strand, within ABID97_RS16115 at 3336.230 kb on + strand, within ABID97_RS16115 at 3336.231 kb on - strand, within ABID97_RS16115 at 3336.231 kb on - strand, within ABID97_RS16115 at 3336.284 kb on + strand at 3336.285 kb on - strand at 3336.285 kb on - strand at 3336.326 kb on + strand at 3336.326 kb on + strand at 3336.691 kb on + strand, within ABID97_RS16120 at 3336.692 kb on - strand, within ABID97_RS16120 at 3336.692 kb on - strand, within ABID97_RS16120 at 3336.829 kb on + strand, within ABID97_RS16120 at 3336.949 kb on + strand at 3337.337 kb on - strand, within ABID97_RS16125
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 3,334,340 - ABID97_RS16105 0.26 +0.5 3,334,340 - ABID97_RS16105 0.26 -0.7 3,334,340 - ABID97_RS16105 0.26 -0.3 3,334,349 - ABID97_RS16105 0.28 -0.0 3,334,349 - ABID97_RS16105 0.28 -0.6 3,334,501 + ABID97_RS16105 0.66 -0.4 3,334,501 + ABID97_RS16105 0.66 -0.9 3,334,502 - ABID97_RS16105 0.66 +0.2 3,334,502 - ABID97_RS16105 0.66 -0.3 3,334,502 - ABID97_RS16105 0.66 -0.8 3,334,502 - ABID97_RS16105 0.66 -1.2 3,334,507 + ABID97_RS16105 0.67 -0.2 3,334,507 + ABID97_RS16105 0.67 -0.1 3,334,508 - ABID97_RS16105 0.68 -1.1 3,334,782 + ABID97_RS16110 0.23 -0.2 3,334,783 - ABID97_RS16110 0.23 -0.1 3,334,783 - ABID97_RS16110 0.23 -0.1 3,334,860 + ABID97_RS16110 0.37 -0.4 3,334,861 - ABID97_RS16110 0.37 -0.4 3,335,044 - ABID97_RS16110 0.69 -0.1 3,335,122 - ABID97_RS16110 0.82 +0.0 3,335,487 - ABID97_RS16115 0.23 -0.4 3,335,487 - ABID97_RS16115 0.23 -0.2 3,335,597 + ABID97_RS16115 0.32 +0.9 3,335,598 - ABID97_RS16115 0.32 -0.4 3,335,634 - ABID97_RS16115 0.35 +2.2 3,335,694 + ABID97_RS16115 0.40 -0.1 3,335,694 + ABID97_RS16115 0.40 +0.1 3,335,694 + ABID97_RS16115 0.40 -0.2 3,335,694 + ABID97_RS16115 0.40 +0.3 3,335,694 + ABID97_RS16115 0.40 -0.2 3,335,694 + ABID97_RS16115 0.40 -0.2 3,335,695 - ABID97_RS16115 0.40 -1.1 3,335,695 - ABID97_RS16115 0.40 -0.4 3,335,695 - ABID97_RS16115 0.40 -0.0 3,335,695 - ABID97_RS16115 0.40 -0.1 3,335,695 - ABID97_RS16115 0.40 +0.2 3,335,769 - ABID97_RS16115 0.47 -0.5 3,335,897 + ABID97_RS16115 0.58 +1.0 3,335,897 + ABID97_RS16115 0.58 -0.4 3,335,897 + ABID97_RS16115 0.58 -0.4 3,335,897 + ABID97_RS16115 0.58 -0.6 3,335,897 + ABID97_RS16115 0.58 +1.2 3,335,897 + ABID97_RS16115 0.58 +1.7 3,336,081 - ABID97_RS16115 0.73 -0.4 3,336,230 + ABID97_RS16115 0.86 +0.2 3,336,231 - ABID97_RS16115 0.86 +0.1 3,336,231 - ABID97_RS16115 0.86 +0.3 3,336,284 + +0.0 3,336,285 - +0.1 3,336,285 - -1.0 3,336,326 + -0.3 3,336,326 + -0.2 3,336,691 + ABID97_RS16120 0.53 +0.2 3,336,692 - ABID97_RS16120 0.53 +0.5 3,336,692 - ABID97_RS16120 0.53 +0.3 3,336,829 + ABID97_RS16120 0.78 +0.1 3,336,949 + +0.4 3,337,337 - ABID97_RS16125 0.11 +0.8
Or see this region's nucleotide sequence