Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS15010 and ABID97_RS15015 are separated by 10 nucleotides ABID97_RS15015 and ABID97_RS15020 are separated by 102 nucleotides ABID97_RS15020 and ABID97_RS15025 are separated by 521 nucleotides
ABID97_RS15010: ABID97_RS15010 - cytochrome c-550 PedF, at 3,118,372 to 3,118,890
_RS15010
ABID97_RS15015: ABID97_RS15015 - ABC transporter substrate-binding protein, at 3,118,901 to 3,119,755
_RS15015
ABID97_RS15020: ABID97_RS15020 - aldehyde dehydrogenase, at 3,119,858 to 3,121,378
_RS15020
ABID97_RS15025: ABID97_RS15025 - hypothetical protein, at 3,121,900 to 3,122,193
_RS15025
Position (kb) 3119
3120
3121
3122 Strain fitness (log2 ratio) -1
0
1
2 at 3119.048 kb on + strand, within ABID97_RS15015 at 3119.208 kb on - strand, within ABID97_RS15015 at 3119.303 kb on + strand, within ABID97_RS15015 at 3119.886 kb on + strand at 3119.886 kb on + strand at 3119.887 kb on - strand at 3119.887 kb on - strand at 3119.917 kb on - strand at 3120.228 kb on + strand, within ABID97_RS15020 at 3120.228 kb on + strand, within ABID97_RS15020 at 3120.228 kb on + strand, within ABID97_RS15020 at 3120.228 kb on + strand, within ABID97_RS15020 at 3120.229 kb on - strand, within ABID97_RS15020 at 3120.315 kb on + strand, within ABID97_RS15020 at 3120.316 kb on - strand, within ABID97_RS15020 at 3120.316 kb on - strand, within ABID97_RS15020 at 3120.316 kb on - strand, within ABID97_RS15020 at 3120.316 kb on - strand, within ABID97_RS15020 at 3120.438 kb on + strand, within ABID97_RS15020 at 3120.438 kb on + strand, within ABID97_RS15020 at 3120.439 kb on - strand, within ABID97_RS15020 at 3120.934 kb on - strand, within ABID97_RS15020 at 3120.934 kb on - strand, within ABID97_RS15020 at 3120.939 kb on + strand, within ABID97_RS15020 at 3120.940 kb on - strand, within ABID97_RS15020 at 3120.940 kb on - strand, within ABID97_RS15020 at 3121.314 kb on + strand at 3121.315 kb on - strand at 3121.315 kb on - strand at 3122.010 kb on + strand, within ABID97_RS15025 at 3122.095 kb on + strand, within ABID97_RS15025 at 3122.095 kb on + strand, within ABID97_RS15025 at 3122.095 kb on + strand, within ABID97_RS15025
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 3,119,048 + ABID97_RS15015 0.17 +0.5 3,119,208 - ABID97_RS15015 0.36 +0.2 3,119,303 + ABID97_RS15015 0.47 +0.1 3,119,886 + +0.1 3,119,886 + +0.4 3,119,887 - +0.6 3,119,887 - -0.4 3,119,917 - -0.1 3,120,228 + ABID97_RS15020 0.24 +0.1 3,120,228 + ABID97_RS15020 0.24 -0.2 3,120,228 + ABID97_RS15020 0.24 -0.3 3,120,228 + ABID97_RS15020 0.24 +0.1 3,120,229 - ABID97_RS15020 0.24 -0.1 3,120,315 + ABID97_RS15020 0.30 -0.2 3,120,316 - ABID97_RS15020 0.30 +0.1 3,120,316 - ABID97_RS15020 0.30 -0.5 3,120,316 - ABID97_RS15020 0.30 +0.0 3,120,316 - ABID97_RS15020 0.30 +0.2 3,120,438 + ABID97_RS15020 0.38 -0.5 3,120,438 + ABID97_RS15020 0.38 -0.2 3,120,439 - ABID97_RS15020 0.38 +0.3 3,120,934 - ABID97_RS15020 0.71 +0.5 3,120,934 - ABID97_RS15020 0.71 +0.5 3,120,939 + ABID97_RS15020 0.71 +0.4 3,120,940 - ABID97_RS15020 0.71 +0.6 3,120,940 - ABID97_RS15020 0.71 +0.3 3,121,314 + -0.2 3,121,315 - +0.4 3,121,315 - +0.7 3,122,010 + ABID97_RS15025 0.37 +2.2 3,122,095 + ABID97_RS15025 0.66 -0.1 3,122,095 + ABID97_RS15025 0.66 -0.1 3,122,095 + ABID97_RS15025 0.66 +0.7
Or see this region's nucleotide sequence