Strain Fitness in Variovorax sp. OAS795 around ABID97_RS14950

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS14945 and ABID97_RS14950 are separated by 131 nucleotidesABID97_RS14950 and ABID97_RS14955 are separated by 54 nucleotidesABID97_RS14955 and ABID97_RS14960 overlap by 4 nucleotides ABID97_RS14945: ABID97_RS14945 - 4-hydroxybenzoate 3-monooxygenase, at 3,105,807 to 3,106,988 _RS14945 ABID97_RS14950: ABID97_RS14950 - IclR family transcriptional regulator C-terminal domain-containing protein, at 3,107,120 to 3,107,890 _RS14950 ABID97_RS14955: ABID97_RS14955 - response regulator, at 3,107,945 to 3,108,604 _RS14955 ABID97_RS14960: ABID97_RS14960 - ATP-binding protein, at 3,108,601 to 3,109,932 _RS14960 Position (kb) 3107 3108Strain fitness (log2 ratio) -1 0 1 2at 3106.122 kb on - strand, within ABID97_RS14945at 3106.324 kb on + strand, within ABID97_RS14945at 3106.324 kb on + strand, within ABID97_RS14945at 3106.324 kb on + strand, within ABID97_RS14945at 3106.325 kb on - strand, within ABID97_RS14945at 3106.387 kb on + strand, within ABID97_RS14945at 3106.387 kb on + strand, within ABID97_RS14945at 3106.388 kb on - strand, within ABID97_RS14945at 3106.388 kb on - strand, within ABID97_RS14945at 3106.447 kb on + strand, within ABID97_RS14945at 3106.448 kb on - strand, within ABID97_RS14945at 3106.448 kb on - strand, within ABID97_RS14945at 3106.448 kb on - strand, within ABID97_RS14945at 3106.568 kb on - strand, within ABID97_RS14945at 3106.624 kb on + strand, within ABID97_RS14945at 3106.624 kb on + strand, within ABID97_RS14945at 3106.625 kb on - strand, within ABID97_RS14945at 3106.625 kb on - strand, within ABID97_RS14945at 3106.690 kb on + strand, within ABID97_RS14945at 3106.691 kb on - strand, within ABID97_RS14945at 3107.309 kb on + strand, within ABID97_RS14950at 3107.310 kb on - strand, within ABID97_RS14950at 3107.351 kb on + strand, within ABID97_RS14950at 3107.352 kb on - strand, within ABID97_RS14950at 3107.484 kb on - strand, within ABID97_RS14950at 3107.484 kb on - strand, within ABID97_RS14950at 3107.700 kb on - strand, within ABID97_RS14950at 3108.018 kb on - strand, within ABID97_RS14955at 3108.077 kb on + strand, within ABID97_RS14955at 3108.077 kb on + strand, within ABID97_RS14955at 3108.078 kb on - strand, within ABID97_RS14955at 3108.237 kb on - strand, within ABID97_RS14955at 3108.323 kb on + strand, within ABID97_RS14955at 3108.324 kb on - strand, within ABID97_RS14955at 3108.479 kb on + strand, within ABID97_RS14955at 3108.479 kb on + strand, within ABID97_RS14955at 3108.480 kb on - strand, within ABID97_RS14955at 3108.480 kb on - strand, within ABID97_RS14955at 3108.584 kb on + strandat 3108.584 kb on + strandat 3108.585 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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3,106,122 - ABID97_RS14945 0.27 -0.2
3,106,324 + ABID97_RS14945 0.44 +0.2
3,106,324 + ABID97_RS14945 0.44 +0.2
3,106,324 + ABID97_RS14945 0.44 +2.3
3,106,325 - ABID97_RS14945 0.44 -0.5
3,106,387 + ABID97_RS14945 0.49 +0.2
3,106,387 + ABID97_RS14945 0.49 -0.6
3,106,388 - ABID97_RS14945 0.49 -0.2
3,106,388 - ABID97_RS14945 0.49 -0.1
3,106,447 + ABID97_RS14945 0.54 +0.6
3,106,448 - ABID97_RS14945 0.54 +0.2
3,106,448 - ABID97_RS14945 0.54 -0.1
3,106,448 - ABID97_RS14945 0.54 -0.3
3,106,568 - ABID97_RS14945 0.64 -0.1
3,106,624 + ABID97_RS14945 0.69 -0.5
3,106,624 + ABID97_RS14945 0.69 +0.6
3,106,625 - ABID97_RS14945 0.69 -0.2
3,106,625 - ABID97_RS14945 0.69 -0.1
3,106,690 + ABID97_RS14945 0.75 -0.5
3,106,691 - ABID97_RS14945 0.75 +0.4
3,107,309 + ABID97_RS14950 0.25 +0.0
3,107,310 - ABID97_RS14950 0.25 -0.5
3,107,351 + ABID97_RS14950 0.30 -0.1
3,107,352 - ABID97_RS14950 0.30 +0.1
3,107,484 - ABID97_RS14950 0.47 +1.5
3,107,484 - ABID97_RS14950 0.47 -0.4
3,107,700 - ABID97_RS14950 0.75 -0.3
3,108,018 - ABID97_RS14955 0.11 +0.3
3,108,077 + ABID97_RS14955 0.20 +0.7
3,108,077 + ABID97_RS14955 0.20 -0.6
3,108,078 - ABID97_RS14955 0.20 -0.4
3,108,237 - ABID97_RS14955 0.44 +0.2
3,108,323 + ABID97_RS14955 0.57 -0.7
3,108,324 - ABID97_RS14955 0.57 +0.0
3,108,479 + ABID97_RS14955 0.81 -0.7
3,108,479 + ABID97_RS14955 0.81 -0.2
3,108,480 - ABID97_RS14955 0.81 -0.7
3,108,480 - ABID97_RS14955 0.81 +0.1
3,108,584 + +0.2
3,108,584 + -0.2
3,108,585 - -0.2

Or see this region's nucleotide sequence