Strain Fitness in Variovorax sp. OAS795 around ABID97_RS14195

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS14190 and ABID97_RS14195 are separated by 126 nucleotidesABID97_RS14195 and ABID97_RS14200 overlap by 4 nucleotides ABID97_RS14190: ABID97_RS14190 - RluA family pseudouridine synthase, at 2,951,543 to 2,952,526 _RS14190 ABID97_RS14195: ABID97_RS14195 - SMC-Scp complex subunit ScpB, at 2,952,653 to 2,953,531 _RS14195 ABID97_RS14200: ABID97_RS14200 - pseudouridine synthase, at 2,953,528 to 2,955,336 _RS14200 Position (kb) 2952 2953 2954Strain fitness (log2 ratio) -2 -1 0 1 2at 2951.687 kb on + strand, within ABID97_RS14190at 2951.690 kb on - strand, within ABID97_RS14190at 2952.239 kb on - strand, within ABID97_RS14190at 2952.512 kb on + strandat 2952.512 kb on + strandat 2952.512 kb on + strandat 2952.513 kb on - strandat 2952.513 kb on - strandat 2952.513 kb on - strandat 2952.513 kb on - strandat 2954.196 kb on + strand, within ABID97_RS14200at 2954.197 kb on - strand, within ABID97_RS14200

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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2,951,687 + ABID97_RS14190 0.15 +1.4
2,951,690 - ABID97_RS14190 0.15 +2.2
2,952,239 - ABID97_RS14190 0.71 +1.8
2,952,512 + +0.4
2,952,512 + +1.6
2,952,512 + -0.4
2,952,513 - +0.7
2,952,513 - +0.0
2,952,513 - -0.3
2,952,513 - +0.3
2,954,196 + ABID97_RS14200 0.37 -1.9
2,954,197 - ABID97_RS14200 0.37 +0.6

Or see this region's nucleotide sequence