Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13750

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13730 and ABID97_RS13735 overlap by 4 nucleotidesABID97_RS13735 and ABID97_RS13740 are separated by 48 nucleotidesABID97_RS13740 and ABID97_RS13745 overlap by 4 nucleotidesABID97_RS13745 and ABID97_RS13750 are separated by 4 nucleotidesABID97_RS13750 and ABID97_RS13755 are separated by 146 nucleotides ABID97_RS13730: ABID97_RS13730 - hypothetical protein, at 2,855,758 to 2,855,925 _RS13730 ABID97_RS13735: ABID97_RS13735 - hypothetical protein, at 2,855,922 to 2,856,044 _RS13735 ABID97_RS13740: ABID97_RS13740 - hypothetical protein, at 2,856,093 to 2,856,365 _RS13740 ABID97_RS13745: ABID97_RS13745 - hypothetical protein, at 2,856,362 to 2,856,769 _RS13745 ABID97_RS13750: ABID97_RS13750 - hypothetical protein, at 2,856,774 to 2,856,983 _RS13750 ABID97_RS13755: ABID97_RS13755 - S24 family peptidase, at 2,857,130 to 2,857,798 _RS13755 Position (kb) 2856 2857Strain fitness (log2 ratio) -1 0 1at 2855.914 kb on - strandat 2855.942 kb on - strand, within ABID97_RS13735at 2855.942 kb on - strand, within ABID97_RS13735at 2856.250 kb on + strand, within ABID97_RS13740at 2856.278 kb on + strand, within ABID97_RS13740at 2856.279 kb on - strand, within ABID97_RS13740at 2856.695 kb on + strand, within ABID97_RS13745at 2856.929 kb on - strand, within ABID97_RS13750at 2857.801 kb on - strandat 2857.955 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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2,855,914 - +0.4
2,855,942 - ABID97_RS13735 0.16 +0.3
2,855,942 - ABID97_RS13735 0.16 +1.1
2,856,250 + ABID97_RS13740 0.58 +0.4
2,856,278 + ABID97_RS13740 0.68 -0.5
2,856,279 - ABID97_RS13740 0.68 +0.7
2,856,695 + ABID97_RS13745 0.82 -0.1
2,856,929 - ABID97_RS13750 0.74 -0.0
2,857,801 - -0.1
2,857,955 - -0.2

Or see this region's nucleotide sequence