Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13285

Experiment: D-Mannose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS13280 and ABID97_RS13285 are separated by 125 nucleotidesABID97_RS13285 and ABID97_RS13290 are separated by 135 nucleotides ABID97_RS13280: ABID97_RS13280 - thiamine pyrophosphate-dependent enzyme, at 2,766,068 to 2,767,708 _RS13280 ABID97_RS13285: ABID97_RS13285 - aldolase, at 2,767,834 to 2,768,631 _RS13285 ABID97_RS13290: ABID97_RS13290 - amino acid ABC transporter substrate-binding protein, at 2,768,767 to 2,769,786 _RS13290 Position (kb) 2767 2768 2769Strain fitness (log2 ratio) -2 -1 0 1at 2767.469 kb on + strand, within ABID97_RS13280at 2767.750 kb on + strandat 2767.757 kb on + strandat 2767.758 kb on - strandat 2768.023 kb on + strand, within ABID97_RS13285at 2768.387 kb on - strand, within ABID97_RS13285at 2768.423 kb on - strand, within ABID97_RS13285at 2768.683 kb on + strandat 2768.683 kb on + strandat 2768.684 kb on - strandat 2769.403 kb on + strand, within ABID97_RS13290at 2769.404 kb on - strand, within ABID97_RS13290at 2769.524 kb on - strand, within ABID97_RS13290

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
remove
2,767,469 + ABID97_RS13280 0.85 +0.2
2,767,750 + -0.4
2,767,757 + -0.7
2,767,758 - -0.0
2,768,023 + ABID97_RS13285 0.24 -0.2
2,768,387 - ABID97_RS13285 0.69 +0.5
2,768,423 - ABID97_RS13285 0.74 -0.7
2,768,683 + -0.3
2,768,683 + -2.4
2,768,684 - -0.1
2,769,403 + ABID97_RS13290 0.62 +0.9
2,769,404 - ABID97_RS13290 0.62 -0.4
2,769,524 - ABID97_RS13290 0.74 -0.2

Or see this region's nucleotide sequence