Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS13005 and ABID97_RS13010 are separated by 3 nucleotides ABID97_RS13010 and ABID97_RS13015 overlap by 4 nucleotides ABID97_RS13015 and ABID97_RS13020 are separated by 35 nucleotides
ABID97_RS13005: ABID97_RS13005 - type VI secretion system baseplate subunit TssK, at 2,700,564 to 2,701,952
_RS13005
ABID97_RS13010: ABID97_RS13010 - DotU family type IV/VI secretion system protein, at 2,701,956 to 2,702,630
_RS13010
ABID97_RS13015: ABID97_RS13015 - type VI secretion protein IcmF/TssM N-terminal domain-containing protein, at 2,702,627 to 2,706,433
_RS13015
ABID97_RS13020: ABID97_RS13020 - serine hydrolase, at 2,706,469 to 2,708,160
_RS13020
Position (kb)
2702
2703
2704
2705
2706
2707 Strain fitness (log2 ratio)
-1
0
1 at 2701.654 kb on - strand, within ABID97_RS13005 at 2702.302 kb on - strand, within ABID97_RS13010 at 2702.763 kb on - strand at 2702.967 kb on - strand at 2703.353 kb on + strand, within ABID97_RS13015 at 2703.379 kb on + strand, within ABID97_RS13015 at 2703.383 kb on + strand, within ABID97_RS13015 at 2703.965 kb on + strand, within ABID97_RS13015 at 2704.133 kb on + strand, within ABID97_RS13015 at 2704.134 kb on - strand, within ABID97_RS13015 at 2704.134 kb on - strand, within ABID97_RS13015 at 2704.155 kb on - strand, within ABID97_RS13015 at 2704.172 kb on + strand, within ABID97_RS13015 at 2704.256 kb on + strand, within ABID97_RS13015 at 2704.256 kb on + strand, within ABID97_RS13015 at 2704.258 kb on + strand, within ABID97_RS13015 at 2704.260 kb on + strand, within ABID97_RS13015 at 2704.394 kb on + strand, within ABID97_RS13015 at 2704.394 kb on + strand, within ABID97_RS13015 at 2704.394 kb on + strand, within ABID97_RS13015 at 2704.395 kb on - strand, within ABID97_RS13015 at 2705.375 kb on + strand, within ABID97_RS13015 at 2706.143 kb on + strand at 2706.815 kb on - strand, within ABID97_RS13020 at 2707.157 kb on - strand, within ABID97_RS13020 at 2707.249 kb on + strand, within ABID97_RS13020 at 2707.346 kb on - strand, within ABID97_RS13020 at 2707.357 kb on + strand, within ABID97_RS13020
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 2,701,654 - ABID97_RS13005 0.78 +0.1 2,702,302 - ABID97_RS13010 0.51 -0.7 2,702,763 - +0.1 2,702,967 - +0.6 2,703,353 + ABID97_RS13015 0.19 +0.1 2,703,379 + ABID97_RS13015 0.20 -0.2 2,703,383 + ABID97_RS13015 0.20 -0.1 2,703,965 + ABID97_RS13015 0.35 -0.3 2,704,133 + ABID97_RS13015 0.40 -0.1 2,704,134 - ABID97_RS13015 0.40 -0.1 2,704,134 - ABID97_RS13015 0.40 -0.2 2,704,155 - ABID97_RS13015 0.40 -0.1 2,704,172 + ABID97_RS13015 0.41 +0.5 2,704,256 + ABID97_RS13015 0.43 -0.4 2,704,256 + ABID97_RS13015 0.43 -0.4 2,704,258 + ABID97_RS13015 0.43 -0.5 2,704,260 + ABID97_RS13015 0.43 -0.3 2,704,394 + ABID97_RS13015 0.46 -0.1 2,704,394 + ABID97_RS13015 0.46 -1.5 2,704,394 + ABID97_RS13015 0.46 +1.0 2,704,395 - ABID97_RS13015 0.46 +0.8 2,705,375 + ABID97_RS13015 0.72 +0.5 2,706,143 + +0.1 2,706,815 - ABID97_RS13020 0.20 -0.4 2,707,157 - ABID97_RS13020 0.41 +0.8 2,707,249 + ABID97_RS13020 0.46 -0.6 2,707,346 - ABID97_RS13020 0.52 -0.3 2,707,357 + ABID97_RS13020 0.52 -0.2
Or see this region's nucleotide sequence