Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13015

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13005 and ABID97_RS13010 are separated by 3 nucleotidesABID97_RS13010 and ABID97_RS13015 overlap by 4 nucleotidesABID97_RS13015 and ABID97_RS13020 are separated by 35 nucleotides ABID97_RS13005: ABID97_RS13005 - type VI secretion system baseplate subunit TssK, at 2,700,564 to 2,701,952 _RS13005 ABID97_RS13010: ABID97_RS13010 - DotU family type IV/VI secretion system protein, at 2,701,956 to 2,702,630 _RS13010 ABID97_RS13015: ABID97_RS13015 - type VI secretion protein IcmF/TssM N-terminal domain-containing protein, at 2,702,627 to 2,706,433 _RS13015 ABID97_RS13020: ABID97_RS13020 - serine hydrolase, at 2,706,469 to 2,708,160 _RS13020 Position (kb) 2702 2703 2704 2705 2706 2707Strain fitness (log2 ratio) -1 0 1at 2701.654 kb on - strand, within ABID97_RS13005at 2702.302 kb on - strand, within ABID97_RS13010at 2702.763 kb on - strandat 2702.967 kb on - strandat 2703.353 kb on + strand, within ABID97_RS13015at 2703.379 kb on + strand, within ABID97_RS13015at 2703.383 kb on + strand, within ABID97_RS13015at 2703.965 kb on + strand, within ABID97_RS13015at 2704.133 kb on + strand, within ABID97_RS13015at 2704.134 kb on - strand, within ABID97_RS13015at 2704.134 kb on - strand, within ABID97_RS13015at 2704.155 kb on - strand, within ABID97_RS13015at 2704.172 kb on + strand, within ABID97_RS13015at 2704.256 kb on + strand, within ABID97_RS13015at 2704.256 kb on + strand, within ABID97_RS13015at 2704.258 kb on + strand, within ABID97_RS13015at 2704.260 kb on + strand, within ABID97_RS13015at 2704.394 kb on + strand, within ABID97_RS13015at 2704.394 kb on + strand, within ABID97_RS13015at 2704.394 kb on + strand, within ABID97_RS13015at 2704.395 kb on - strand, within ABID97_RS13015at 2705.375 kb on + strand, within ABID97_RS13015at 2706.143 kb on + strandat 2706.815 kb on - strand, within ABID97_RS13020at 2707.157 kb on - strand, within ABID97_RS13020at 2707.249 kb on + strand, within ABID97_RS13020at 2707.346 kb on - strand, within ABID97_RS13020at 2707.357 kb on + strand, within ABID97_RS13020

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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2,701,654 - ABID97_RS13005 0.78 +0.1
2,702,302 - ABID97_RS13010 0.51 -0.7
2,702,763 - +0.1
2,702,967 - +0.6
2,703,353 + ABID97_RS13015 0.19 +0.1
2,703,379 + ABID97_RS13015 0.20 -0.2
2,703,383 + ABID97_RS13015 0.20 -0.1
2,703,965 + ABID97_RS13015 0.35 -0.3
2,704,133 + ABID97_RS13015 0.40 -0.1
2,704,134 - ABID97_RS13015 0.40 -0.1
2,704,134 - ABID97_RS13015 0.40 -0.2
2,704,155 - ABID97_RS13015 0.40 -0.1
2,704,172 + ABID97_RS13015 0.41 +0.5
2,704,256 + ABID97_RS13015 0.43 -0.4
2,704,256 + ABID97_RS13015 0.43 -0.4
2,704,258 + ABID97_RS13015 0.43 -0.5
2,704,260 + ABID97_RS13015 0.43 -0.3
2,704,394 + ABID97_RS13015 0.46 -0.1
2,704,394 + ABID97_RS13015 0.46 -1.5
2,704,394 + ABID97_RS13015 0.46 +1.0
2,704,395 - ABID97_RS13015 0.46 +0.8
2,705,375 + ABID97_RS13015 0.72 +0.5
2,706,143 + +0.1
2,706,815 - ABID97_RS13020 0.20 -0.4
2,707,157 - ABID97_RS13020 0.41 +0.8
2,707,249 + ABID97_RS13020 0.46 -0.6
2,707,346 - ABID97_RS13020 0.52 -0.3
2,707,357 + ABID97_RS13020 0.52 -0.2

Or see this region's nucleotide sequence