Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11555

Experiment: D-Mannose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS11550 and ABID97_RS11555 are separated by 30 nucleotidesABID97_RS11555 and ABID97_RS11560 are separated by 37 nucleotides ABID97_RS11550: ABID97_RS11550 - alpha-hydroxy acid oxidase, at 2,383,614 to 2,384,789 _RS11550 ABID97_RS11555: ABID97_RS11555 - ABC transporter substrate-binding protein, at 2,384,820 to 2,385,995 _RS11555 ABID97_RS11560: ABID97_RS11560 - indolepyruvate oxidoreductase subunit beta family protein, at 2,386,033 to 2,387,589 _RS11560 Position (kb) 2384 2385 2386Strain fitness (log2 ratio) -2 -1 0 1at 2384.332 kb on + strand, within ABID97_RS11550at 2384.392 kb on + strand, within ABID97_RS11550at 2384.722 kb on + strandat 2385.226 kb on + strand, within ABID97_RS11555at 2385.227 kb on - strand, within ABID97_RS11555at 2385.806 kb on - strand, within ABID97_RS11555at 2385.806 kb on - strand, within ABID97_RS11555at 2386.962 kb on - strand, within ABID97_RS11560

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
remove
2,384,332 + ABID97_RS11550 0.61 +1.2
2,384,392 + ABID97_RS11550 0.66 -0.2
2,384,722 + -0.2
2,385,226 + ABID97_RS11555 0.35 -0.6
2,385,227 - ABID97_RS11555 0.35 -0.9
2,385,806 - ABID97_RS11555 0.84 -1.2
2,385,806 - ABID97_RS11555 0.84 -2.5
2,386,962 - ABID97_RS11560 0.60 +0.1

Or see this region's nucleotide sequence