Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11380

Experiment: D-Mannose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS11375 and ABID97_RS11380 are separated by 17 nucleotidesABID97_RS11380 and ABID97_RS11385 are separated by 6 nucleotides ABID97_RS11375: ABID97_RS11375 - tripartite tricarboxylate transporter substrate binding protein, at 2,348,902 to 2,349,930 _RS11375 ABID97_RS11380: ABID97_RS11380 - acetyl-CoA C-acyltransferase, at 2,349,948 to 2,351,132 _RS11380 ABID97_RS11385: ABID97_RS11385 - acyl-CoA dehydrogenase family protein, at 2,351,139 to 2,352,326 _RS11385 Position (kb) 2349 2350 2351 2352Strain fitness (log2 ratio) -1 0 1 2at 2349.274 kb on + strand, within ABID97_RS11375at 2349.274 kb on + strand, within ABID97_RS11375at 2349.275 kb on - strand, within ABID97_RS11375at 2349.413 kb on - strand, within ABID97_RS11375at 2349.421 kb on + strand, within ABID97_RS11375at 2349.928 kb on + strandat 2349.932 kb on + strandat 2349.944 kb on - strandat 2350.503 kb on + strand, within ABID97_RS11380at 2350.623 kb on + strand, within ABID97_RS11380at 2350.924 kb on - strand, within ABID97_RS11380at 2351.130 kb on + strandat 2351.423 kb on + strand, within ABID97_RS11385at 2351.423 kb on + strand, within ABID97_RS11385at 2351.423 kb on + strand, within ABID97_RS11385at 2351.424 kb on - strand, within ABID97_RS11385at 2351.424 kb on - strand, within ABID97_RS11385at 2351.520 kb on + strand, within ABID97_RS11385at 2351.602 kb on - strand, within ABID97_RS11385at 2351.866 kb on - strand, within ABID97_RS11385

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
remove
2,349,274 + ABID97_RS11375 0.36 +0.0
2,349,274 + ABID97_RS11375 0.36 +0.2
2,349,275 - ABID97_RS11375 0.36 +0.7
2,349,413 - ABID97_RS11375 0.50 +1.8
2,349,421 + ABID97_RS11375 0.50 +0.2
2,349,928 + -0.6
2,349,932 + +0.3
2,349,944 - -0.3
2,350,503 + ABID97_RS11380 0.47 +0.2
2,350,623 + ABID97_RS11380 0.57 -0.8
2,350,924 - ABID97_RS11380 0.82 +0.5
2,351,130 + +0.0
2,351,423 + ABID97_RS11385 0.24 -0.2
2,351,423 + ABID97_RS11385 0.24 +1.1
2,351,423 + ABID97_RS11385 0.24 +0.3
2,351,424 - ABID97_RS11385 0.24 +0.1
2,351,424 - ABID97_RS11385 0.24 -0.3
2,351,520 + ABID97_RS11385 0.32 -0.1
2,351,602 - ABID97_RS11385 0.39 -0.4
2,351,866 - ABID97_RS11385 0.61 -0.0

Or see this region's nucleotide sequence