Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS11375 and ABID97_RS11380 are separated by 17 nucleotides ABID97_RS11380 and ABID97_RS11385 are separated by 6 nucleotides
ABID97_RS11375: ABID97_RS11375 - tripartite tricarboxylate transporter substrate binding protein, at 2,348,902 to 2,349,930
_RS11375
ABID97_RS11380: ABID97_RS11380 - acetyl-CoA C-acyltransferase, at 2,349,948 to 2,351,132
_RS11380
ABID97_RS11385: ABID97_RS11385 - acyl-CoA dehydrogenase family protein, at 2,351,139 to 2,352,326
_RS11385
Position (kb)
2349
2350
2351
2352 Strain fitness (log2 ratio)
-1
0
1
2 at 2349.274 kb on + strand, within ABID97_RS11375 at 2349.274 kb on + strand, within ABID97_RS11375 at 2349.275 kb on - strand, within ABID97_RS11375 at 2349.413 kb on - strand, within ABID97_RS11375 at 2349.421 kb on + strand, within ABID97_RS11375 at 2349.928 kb on + strand at 2349.932 kb on + strand at 2349.944 kb on - strand at 2350.503 kb on + strand, within ABID97_RS11380 at 2350.623 kb on + strand, within ABID97_RS11380 at 2350.924 kb on - strand, within ABID97_RS11380 at 2351.130 kb on + strand at 2351.423 kb on + strand, within ABID97_RS11385 at 2351.423 kb on + strand, within ABID97_RS11385 at 2351.423 kb on + strand, within ABID97_RS11385 at 2351.424 kb on - strand, within ABID97_RS11385 at 2351.424 kb on - strand, within ABID97_RS11385 at 2351.520 kb on + strand, within ABID97_RS11385 at 2351.602 kb on - strand, within ABID97_RS11385 at 2351.866 kb on - strand, within ABID97_RS11385
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 2,349,274 + ABID97_RS11375 0.36 +0.0 2,349,274 + ABID97_RS11375 0.36 +0.2 2,349,275 - ABID97_RS11375 0.36 +0.7 2,349,413 - ABID97_RS11375 0.50 +1.8 2,349,421 + ABID97_RS11375 0.50 +0.2 2,349,928 + -0.6 2,349,932 + +0.3 2,349,944 - -0.3 2,350,503 + ABID97_RS11380 0.47 +0.2 2,350,623 + ABID97_RS11380 0.57 -0.8 2,350,924 - ABID97_RS11380 0.82 +0.5 2,351,130 + +0.0 2,351,423 + ABID97_RS11385 0.24 -0.2 2,351,423 + ABID97_RS11385 0.24 +1.1 2,351,423 + ABID97_RS11385 0.24 +0.3 2,351,424 - ABID97_RS11385 0.24 +0.1 2,351,424 - ABID97_RS11385 0.24 -0.3 2,351,520 + ABID97_RS11385 0.32 -0.1 2,351,602 - ABID97_RS11385 0.39 -0.4 2,351,866 - ABID97_RS11385 0.61 -0.0
Or see this region's nucleotide sequence