Strain Fitness in Variovorax sp. OAS795 around ABID97_RS09690

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS09685 and ABID97_RS09690 overlap by 4 nucleotidesABID97_RS09690 and ABID97_RS09695 overlap by 4 nucleotidesABID97_RS09695 and ABID97_RS09700 are separated by 70 nucleotides ABID97_RS09685: ABID97_RS09685 - terminase TerL endonuclease subunit, at 2,023,012 to 2,024,718 _RS09685 ABID97_RS09690: ABID97_RS09690 - phage portal protein, at 2,024,715 to 2,026,241 _RS09690 ABID97_RS09695: ABID97_RS09695 - head maturation protease, ClpP-related, at 2,026,238 to 2,026,924 _RS09695 ABID97_RS09700: ABID97_RS09700 - phage major capsid protein, at 2,026,995 to 2,028,455 _RS09700 Position (kb) 2024 2025 2026 2027Strain fitness (log2 ratio) -1 0 1 2at 2023.841 kb on + strand, within ABID97_RS09685at 2023.920 kb on - strand, within ABID97_RS09685at 2024.200 kb on + strand, within ABID97_RS09685at 2024.203 kb on + strand, within ABID97_RS09685at 2024.204 kb on - strand, within ABID97_RS09685at 2024.714 kb on + strandat 2024.715 kb on - strandat 2025.705 kb on + strand, within ABID97_RS09690at 2025.777 kb on + strand, within ABID97_RS09690at 2025.777 kb on + strand, within ABID97_RS09690at 2025.799 kb on - strand, within ABID97_RS09690at 2025.799 kb on - strand, within ABID97_RS09690at 2026.098 kb on + strandat 2026.098 kb on + strandat 2026.115 kb on - strandat 2026.388 kb on + strand, within ABID97_RS09695at 2026.433 kb on + strand, within ABID97_RS09695at 2026.434 kb on - strand, within ABID97_RS09695at 2026.655 kb on + strand, within ABID97_RS09695at 2026.655 kb on + strand, within ABID97_RS09695

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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2,023,841 + ABID97_RS09685 0.49 +1.4
2,023,920 - ABID97_RS09685 0.53 +0.4
2,024,200 + ABID97_RS09685 0.70 -0.0
2,024,203 + ABID97_RS09685 0.70 +0.5
2,024,204 - ABID97_RS09685 0.70 +0.5
2,024,714 + +0.1
2,024,715 - +0.6
2,025,705 + ABID97_RS09690 0.65 +0.3
2,025,777 + ABID97_RS09690 0.70 +0.1
2,025,777 + ABID97_RS09690 0.70 +1.0
2,025,799 - ABID97_RS09690 0.71 +2.0
2,025,799 - ABID97_RS09690 0.71 +0.3
2,026,098 + -0.7
2,026,098 + +0.6
2,026,115 - -0.1
2,026,388 + ABID97_RS09695 0.22 -0.1
2,026,433 + ABID97_RS09695 0.28 +1.2
2,026,434 - ABID97_RS09695 0.29 -0.2
2,026,655 + ABID97_RS09695 0.61 -0.0
2,026,655 + ABID97_RS09695 0.61 +0.2

Or see this region's nucleotide sequence