Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS09685 and ABID97_RS09690 overlap by 4 nucleotides ABID97_RS09690 and ABID97_RS09695 overlap by 4 nucleotides ABID97_RS09695 and ABID97_RS09700 are separated by 70 nucleotides
ABID97_RS09685: ABID97_RS09685 - terminase TerL endonuclease subunit, at 2,023,012 to 2,024,718
_RS09685
ABID97_RS09690: ABID97_RS09690 - phage portal protein, at 2,024,715 to 2,026,241
_RS09690
ABID97_RS09695: ABID97_RS09695 - head maturation protease, ClpP-related, at 2,026,238 to 2,026,924
_RS09695
ABID97_RS09700: ABID97_RS09700 - phage major capsid protein, at 2,026,995 to 2,028,455
_RS09700
Position (kb)
2024
2025
2026
2027 Strain fitness (log2 ratio)
-1
0
1
2 at 2023.841 kb on + strand, within ABID97_RS09685 at 2023.920 kb on - strand, within ABID97_RS09685 at 2024.200 kb on + strand, within ABID97_RS09685 at 2024.203 kb on + strand, within ABID97_RS09685 at 2024.204 kb on - strand, within ABID97_RS09685 at 2024.714 kb on + strand at 2024.715 kb on - strand at 2025.705 kb on + strand, within ABID97_RS09690 at 2025.777 kb on + strand, within ABID97_RS09690 at 2025.777 kb on + strand, within ABID97_RS09690 at 2025.799 kb on - strand, within ABID97_RS09690 at 2025.799 kb on - strand, within ABID97_RS09690 at 2026.098 kb on + strand at 2026.098 kb on + strand at 2026.115 kb on - strand at 2026.388 kb on + strand, within ABID97_RS09695 at 2026.433 kb on + strand, within ABID97_RS09695 at 2026.434 kb on - strand, within ABID97_RS09695 at 2026.655 kb on + strand, within ABID97_RS09695 at 2026.655 kb on + strand, within ABID97_RS09695
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 2,023,841 + ABID97_RS09685 0.49 +1.4 2,023,920 - ABID97_RS09685 0.53 +0.4 2,024,200 + ABID97_RS09685 0.70 -0.0 2,024,203 + ABID97_RS09685 0.70 +0.5 2,024,204 - ABID97_RS09685 0.70 +0.5 2,024,714 + +0.1 2,024,715 - +0.6 2,025,705 + ABID97_RS09690 0.65 +0.3 2,025,777 + ABID97_RS09690 0.70 +0.1 2,025,777 + ABID97_RS09690 0.70 +1.0 2,025,799 - ABID97_RS09690 0.71 +2.0 2,025,799 - ABID97_RS09690 0.71 +0.3 2,026,098 + -0.7 2,026,098 + +0.6 2,026,115 - -0.1 2,026,388 + ABID97_RS09695 0.22 -0.1 2,026,433 + ABID97_RS09695 0.28 +1.2 2,026,434 - ABID97_RS09695 0.29 -0.2 2,026,655 + ABID97_RS09695 0.61 -0.0 2,026,655 + ABID97_RS09695 0.61 +0.2
Or see this region's nucleotide sequence