Strain Fitness in Variovorax sp. OAS795 around ABID97_RS09220

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS09215 and ABID97_RS09220 are separated by 125 nucleotidesABID97_RS09220 and ABID97_RS09225 overlap by 4 nucleotides ABID97_RS09215: ABID97_RS09215 - ZIP family metal transporter, at 1,938,604 to 1,939,539 _RS09215 ABID97_RS09220: ABID97_RS09220 - hypothetical protein, at 1,939,665 to 1,939,880 _RS09220 ABID97_RS09225: ABID97_RS09225 - FAD-dependent oxidoreductase, at 1,939,877 to 1,941,064 _RS09225 Position (kb) 1939 1940Strain fitness (log2 ratio) -1 0 1at 1939.291 kb on + strand, within ABID97_RS09215at 1939.708 kb on + strand, within ABID97_RS09220at 1939.708 kb on + strand, within ABID97_RS09220at 1940.046 kb on + strand, within ABID97_RS09225at 1940.298 kb on + strand, within ABID97_RS09225at 1940.298 kb on + strand, within ABID97_RS09225at 1940.298 kb on + strand, within ABID97_RS09225at 1940.299 kb on - strand, within ABID97_RS09225at 1940.299 kb on - strand, within ABID97_RS09225at 1940.584 kb on - strand, within ABID97_RS09225

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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1,939,291 + ABID97_RS09215 0.73 +0.8
1,939,708 + ABID97_RS09220 0.20 +0.3
1,939,708 + ABID97_RS09220 0.20 +1.0
1,940,046 + ABID97_RS09225 0.14 -0.2
1,940,298 + ABID97_RS09225 0.35 -0.0
1,940,298 + ABID97_RS09225 0.35 -0.1
1,940,298 + ABID97_RS09225 0.35 -0.5
1,940,299 - ABID97_RS09225 0.36 -0.3
1,940,299 - ABID97_RS09225 0.36 -0.5
1,940,584 - ABID97_RS09225 0.60 -0.1

Or see this region's nucleotide sequence