Strain Fitness in Variovorax sp. OAS795 around ABID97_RS08240

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS08235 and ABID97_RS08240 are separated by 63 nucleotidesABID97_RS08240 and ABID97_RS08245 are separated by 132 nucleotides ABID97_RS08235: ABID97_RS08235 - uroporphyrinogen-III C-methyltransferase, at 1,731,454 to 1,732,545 _RS08235 ABID97_RS08240: ABID97_RS08240 - heme biosynthesis HemY N-terminal domain-containing protein, at 1,732,609 to 1,733,892 _RS08240 ABID97_RS08245: ABID97_RS08245 - Rne/Rng family ribonuclease, at 1,734,025 to 1,737,297 _RS08245 Position (kb) 1732 1733 1734Strain fitness (log2 ratio) -2 -1 0 1at 1732.574 kb on + strandat 1733.692 kb on + strand, within ABID97_RS08240at 1733.693 kb on - strand, within ABID97_RS08240at 1733.693 kb on - strand, within ABID97_RS08240at 1733.891 kb on - strandat 1733.891 kb on - strandat 1733.992 kb on - strandat 1733.992 kb on - strandat 1734.452 kb on + strand, within ABID97_RS08245at 1734.510 kb on - strand, within ABID97_RS08245at 1734.620 kb on + strand, within ABID97_RS08245

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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1,732,574 + +1.2
1,733,692 + ABID97_RS08240 0.84 -2.2
1,733,693 - ABID97_RS08240 0.84 -0.7
1,733,693 - ABID97_RS08240 0.84 -0.4
1,733,891 - -0.4
1,733,891 - +0.2
1,733,992 - -0.7
1,733,992 - +0.2
1,734,452 + ABID97_RS08245 0.13 +1.1
1,734,510 - ABID97_RS08245 0.15 -0.5
1,734,620 + ABID97_RS08245 0.18 +0.2

Or see this region's nucleotide sequence