Strain Fitness in Variovorax sp. OAS795 around ABID97_RS06930

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS06925 and ABID97_RS06930 are separated by 453 nucleotidesABID97_RS06930 and ABID97_RS06935 are separated by 5 nucleotidesABID97_RS06935 and ABID97_RS06940 are separated by 23 nucleotides ABID97_RS06925: ABID97_RS06925 - ABC transporter ATP-binding protein/permease, at 1,464,832 to 1,466,616 _RS06925 ABID97_RS06930: ABID97_RS06930 - MFS transporter, at 1,467,070 to 1,468,335 _RS06930 ABID97_RS06935: ABID97_RS06935 - 5'-nucleotidase, at 1,468,341 to 1,469,240 _RS06935 ABID97_RS06940: ABID97_RS06940 - type II secretion system inner membrane protein GspF, at 1,469,264 to 1,470,499 _RS06940 Position (kb) 1467 1468 1469Strain fitness (log2 ratio) -2 -1 0 1 2at 1466.246 kb on + strand, within ABID97_RS06925at 1466.246 kb on + strand, within ABID97_RS06925at 1466.246 kb on + strand, within ABID97_RS06925at 1466.247 kb on - strand, within ABID97_RS06925at 1466.279 kb on + strand, within ABID97_RS06925at 1466.280 kb on - strand, within ABID97_RS06925at 1466.280 kb on - strand, within ABID97_RS06925at 1466.280 kb on - strand, within ABID97_RS06925at 1466.331 kb on - strand, within ABID97_RS06925at 1466.331 kb on - strand, within ABID97_RS06925at 1466.432 kb on + strand, within ABID97_RS06925at 1466.477 kb on + strandat 1466.546 kb on + strandat 1466.546 kb on + strandat 1466.547 kb on - strandat 1466.795 kb on - strandat 1466.795 kb on - strandat 1467.020 kb on + strandat 1467.021 kb on - strandat 1467.021 kb on - strandat 1467.021 kb on - strandat 1467.021 kb on - strandat 1467.172 kb on + strandat 1467.172 kb on + strandat 1467.172 kb on + strandat 1467.172 kb on + strandat 1467.173 kb on - strandat 1467.173 kb on - strandat 1467.173 kb on - strandat 1467.173 kb on - strandat 1467.173 kb on - strandat 1467.173 kb on - strandat 1467.173 kb on - strandat 1467.173 kb on - strandat 1467.526 kb on + strand, within ABID97_RS06930at 1467.526 kb on + strand, within ABID97_RS06930at 1467.527 kb on - strand, within ABID97_RS06930at 1467.595 kb on + strand, within ABID97_RS06930at 1467.596 kb on - strand, within ABID97_RS06930at 1467.596 kb on - strand, within ABID97_RS06930at 1467.596 kb on - strand, within ABID97_RS06930at 1467.596 kb on - strand, within ABID97_RS06930at 1467.596 kb on - strand, within ABID97_RS06930at 1467.596 kb on - strand, within ABID97_RS06930at 1467.596 kb on - strand, within ABID97_RS06930at 1468.040 kb on - strand, within ABID97_RS06930at 1468.040 kb on - strand, within ABID97_RS06930at 1468.090 kb on + strand, within ABID97_RS06930at 1469.266 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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1,466,246 + ABID97_RS06925 0.79 -0.0
1,466,246 + ABID97_RS06925 0.79 +0.3
1,466,246 + ABID97_RS06925 0.79 -0.5
1,466,247 - ABID97_RS06925 0.79 -0.4
1,466,279 + ABID97_RS06925 0.81 +0.4
1,466,280 - ABID97_RS06925 0.81 +0.9
1,466,280 - ABID97_RS06925 0.81 -0.1
1,466,280 - ABID97_RS06925 0.81 +0.2
1,466,331 - ABID97_RS06925 0.84 -0.3
1,466,331 - ABID97_RS06925 0.84 -0.0
1,466,432 + ABID97_RS06925 0.90 -0.7
1,466,477 + +1.8
1,466,546 + -0.3
1,466,546 + -0.2
1,466,547 - -0.1
1,466,795 - +0.4
1,466,795 - +0.4
1,467,020 + +0.1
1,467,021 - +0.1
1,467,021 - +0.6
1,467,021 - +0.3
1,467,021 - +0.3
1,467,172 + -0.5
1,467,172 + +0.5
1,467,172 + +1.1
1,467,172 + -0.3
1,467,173 - -0.2
1,467,173 - -2.0
1,467,173 - -0.1
1,467,173 - +1.3
1,467,173 - -0.1
1,467,173 - +0.7
1,467,173 - -0.1
1,467,173 - -0.2
1,467,526 + ABID97_RS06930 0.36 +0.4
1,467,526 + ABID97_RS06930 0.36 +0.1
1,467,527 - ABID97_RS06930 0.36 +0.1
1,467,595 + ABID97_RS06930 0.41 -0.2
1,467,596 - ABID97_RS06930 0.42 +0.7
1,467,596 - ABID97_RS06930 0.42 -0.4
1,467,596 - ABID97_RS06930 0.42 +0.0
1,467,596 - ABID97_RS06930 0.42 +2.1
1,467,596 - ABID97_RS06930 0.42 -0.3
1,467,596 - ABID97_RS06930 0.42 -0.0
1,467,596 - ABID97_RS06930 0.42 +0.8
1,468,040 - ABID97_RS06930 0.77 +0.5
1,468,040 - ABID97_RS06930 0.77 +0.6
1,468,090 + ABID97_RS06930 0.81 -0.7
1,469,266 - +0.3

Or see this region's nucleotide sequence