Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS06925 and ABID97_RS06930 are separated by 453 nucleotides ABID97_RS06930 and ABID97_RS06935 are separated by 5 nucleotides ABID97_RS06935 and ABID97_RS06940 are separated by 23 nucleotides
ABID97_RS06925: ABID97_RS06925 - ABC transporter ATP-binding protein/permease, at 1,464,832 to 1,466,616
_RS06925
ABID97_RS06930: ABID97_RS06930 - MFS transporter, at 1,467,070 to 1,468,335
_RS06930
ABID97_RS06935: ABID97_RS06935 - 5'-nucleotidase, at 1,468,341 to 1,469,240
_RS06935
ABID97_RS06940: ABID97_RS06940 - type II secretion system inner membrane protein GspF, at 1,469,264 to 1,470,499
_RS06940
Position (kb)
1467
1468
1469 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1466.246 kb on + strand, within ABID97_RS06925 at 1466.246 kb on + strand, within ABID97_RS06925 at 1466.246 kb on + strand, within ABID97_RS06925 at 1466.247 kb on - strand, within ABID97_RS06925 at 1466.279 kb on + strand, within ABID97_RS06925 at 1466.280 kb on - strand, within ABID97_RS06925 at 1466.280 kb on - strand, within ABID97_RS06925 at 1466.280 kb on - strand, within ABID97_RS06925 at 1466.331 kb on - strand, within ABID97_RS06925 at 1466.331 kb on - strand, within ABID97_RS06925 at 1466.432 kb on + strand, within ABID97_RS06925 at 1466.477 kb on + strand at 1466.546 kb on + strand at 1466.546 kb on + strand at 1466.547 kb on - strand at 1466.795 kb on - strand at 1466.795 kb on - strand at 1467.020 kb on + strand at 1467.021 kb on - strand at 1467.021 kb on - strand at 1467.021 kb on - strand at 1467.021 kb on - strand at 1467.172 kb on + strand at 1467.172 kb on + strand at 1467.172 kb on + strand at 1467.172 kb on + strand at 1467.173 kb on - strand at 1467.173 kb on - strand at 1467.173 kb on - strand at 1467.173 kb on - strand at 1467.173 kb on - strand at 1467.173 kb on - strand at 1467.173 kb on - strand at 1467.173 kb on - strand at 1467.526 kb on + strand, within ABID97_RS06930 at 1467.526 kb on + strand, within ABID97_RS06930 at 1467.527 kb on - strand, within ABID97_RS06930 at 1467.595 kb on + strand, within ABID97_RS06930 at 1467.596 kb on - strand, within ABID97_RS06930 at 1467.596 kb on - strand, within ABID97_RS06930 at 1467.596 kb on - strand, within ABID97_RS06930 at 1467.596 kb on - strand, within ABID97_RS06930 at 1467.596 kb on - strand, within ABID97_RS06930 at 1467.596 kb on - strand, within ABID97_RS06930 at 1467.596 kb on - strand, within ABID97_RS06930 at 1468.040 kb on - strand, within ABID97_RS06930 at 1468.040 kb on - strand, within ABID97_RS06930 at 1468.090 kb on + strand, within ABID97_RS06930 at 1469.266 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 1,466,246 + ABID97_RS06925 0.79 -0.0 1,466,246 + ABID97_RS06925 0.79 +0.3 1,466,246 + ABID97_RS06925 0.79 -0.5 1,466,247 - ABID97_RS06925 0.79 -0.4 1,466,279 + ABID97_RS06925 0.81 +0.4 1,466,280 - ABID97_RS06925 0.81 +0.9 1,466,280 - ABID97_RS06925 0.81 -0.1 1,466,280 - ABID97_RS06925 0.81 +0.2 1,466,331 - ABID97_RS06925 0.84 -0.3 1,466,331 - ABID97_RS06925 0.84 -0.0 1,466,432 + ABID97_RS06925 0.90 -0.7 1,466,477 + +1.8 1,466,546 + -0.3 1,466,546 + -0.2 1,466,547 - -0.1 1,466,795 - +0.4 1,466,795 - +0.4 1,467,020 + +0.1 1,467,021 - +0.1 1,467,021 - +0.6 1,467,021 - +0.3 1,467,021 - +0.3 1,467,172 + -0.5 1,467,172 + +0.5 1,467,172 + +1.1 1,467,172 + -0.3 1,467,173 - -0.2 1,467,173 - -2.0 1,467,173 - -0.1 1,467,173 - +1.3 1,467,173 - -0.1 1,467,173 - +0.7 1,467,173 - -0.1 1,467,173 - -0.2 1,467,526 + ABID97_RS06930 0.36 +0.4 1,467,526 + ABID97_RS06930 0.36 +0.1 1,467,527 - ABID97_RS06930 0.36 +0.1 1,467,595 + ABID97_RS06930 0.41 -0.2 1,467,596 - ABID97_RS06930 0.42 +0.7 1,467,596 - ABID97_RS06930 0.42 -0.4 1,467,596 - ABID97_RS06930 0.42 +0.0 1,467,596 - ABID97_RS06930 0.42 +2.1 1,467,596 - ABID97_RS06930 0.42 -0.3 1,467,596 - ABID97_RS06930 0.42 -0.0 1,467,596 - ABID97_RS06930 0.42 +0.8 1,468,040 - ABID97_RS06930 0.77 +0.5 1,468,040 - ABID97_RS06930 0.77 +0.6 1,468,090 + ABID97_RS06930 0.81 -0.7 1,469,266 - +0.3
Or see this region's nucleotide sequence