Strain Fitness in Variovorax sp. OAS795 around ABID97_RS05075

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS05070 and ABID97_RS05075 are separated by 19 nucleotidesABID97_RS05075 and ABID97_RS05080 overlap by 4 nucleotides ABID97_RS05070: ABID97_RS05070 - type VI secretion system tip protein TssI/VgrG, at 1,069,026 to 1,072,064 _RS05070 ABID97_RS05075: ABID97_RS05075 - DUF2169 domain-containing protein, at 1,072,084 to 1,074,678 _RS05075 ABID97_RS05080: ABID97_RS05080 - pentapeptide repeat-containing protein, at 1,074,675 to 1,075,727 _RS05080 Position (kb) 1072 1073 1074 1075Strain fitness (log2 ratio) -2 -1 0 1at 1071.084 kb on + strand, within ABID97_RS05070at 1071.084 kb on + strand, within ABID97_RS05070at 1071.085 kb on - strand, within ABID97_RS05070at 1072.475 kb on - strand, within ABID97_RS05075at 1072.661 kb on - strand, within ABID97_RS05075at 1072.720 kb on + strand, within ABID97_RS05075at 1072.721 kb on - strand, within ABID97_RS05075at 1072.721 kb on - strand, within ABID97_RS05075at 1072.861 kb on + strand, within ABID97_RS05075at 1072.862 kb on - strand, within ABID97_RS05075at 1074.094 kb on + strand, within ABID97_RS05075at 1075.132 kb on - strand, within ABID97_RS05080at 1075.132 kb on - strand, within ABID97_RS05080

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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1,071,084 + ABID97_RS05070 0.68 +0.1
1,071,084 + ABID97_RS05070 0.68 +0.2
1,071,085 - ABID97_RS05070 0.68 +0.3
1,072,475 - ABID97_RS05075 0.15 +0.9
1,072,661 - ABID97_RS05075 0.22 +0.2
1,072,720 + ABID97_RS05075 0.25 +0.3
1,072,721 - ABID97_RS05075 0.25 -0.2
1,072,721 - ABID97_RS05075 0.25 -0.3
1,072,861 + ABID97_RS05075 0.30 +0.0
1,072,862 - ABID97_RS05075 0.30 -0.1
1,074,094 + ABID97_RS05075 0.77 -1.8
1,075,132 - ABID97_RS05080 0.43 +0.4
1,075,132 - ABID97_RS05080 0.43 -1.2

Or see this region's nucleotide sequence