Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04545 and ABID97_RS04550 are separated by 4 nucleotides ABID97_RS04550 and ABID97_RS04555 are separated by 5 nucleotides
ABID97_RS04545: ABID97_RS04545 - glycogen debranching protein GlgX, at 942,488 to 944,611
_RS04545
ABID97_RS04550: ABID97_RS04550 - 1,4-alpha-glucan branching protein GlgB, at 944,616 to 946,787
_RS04550
ABID97_RS04555: ABID97_RS04555 - alpha-amylase family glycosyl hydrolase, at 946,793 to 948,482
_RS04555
Position (kb) 944
945
946
947 Strain fitness (log2 ratio) -1
0
1
2
3 at 943.701 kb on + strand, within ABID97_RS04545 at 943.731 kb on + strand, within ABID97_RS04545 at 943.731 kb on + strand, within ABID97_RS04545 at 943.732 kb on - strand, within ABID97_RS04545 at 943.732 kb on - strand, within ABID97_RS04545 at 943.732 kb on - strand, within ABID97_RS04545 at 943.732 kb on - strand, within ABID97_RS04545 at 943.732 kb on - strand, within ABID97_RS04545 at 943.734 kb on + strand, within ABID97_RS04545 at 943.734 kb on + strand, within ABID97_RS04545 at 943.735 kb on - strand, within ABID97_RS04545 at 943.735 kb on - strand, within ABID97_RS04545 at 943.803 kb on + strand, within ABID97_RS04545 at 943.938 kb on + strand, within ABID97_RS04545 at 943.938 kb on + strand, within ABID97_RS04545 at 943.948 kb on - strand, within ABID97_RS04545 at 943.948 kb on - strand, within ABID97_RS04545 at 944.073 kb on + strand, within ABID97_RS04545 at 944.074 kb on - strand, within ABID97_RS04545 at 944.074 kb on - strand, within ABID97_RS04545 at 944.074 kb on - strand, within ABID97_RS04545 at 944.074 kb on - strand, within ABID97_RS04545 at 944.074 kb on - strand, within ABID97_RS04545 at 944.074 kb on - strand, within ABID97_RS04545 at 944.074 kb on - strand, within ABID97_RS04545 at 944.325 kb on + strand, within ABID97_RS04545 at 944.403 kb on + strand at 944.403 kb on + strand at 944.404 kb on - strand at 944.738 kb on - strand at 944.771 kb on - strand at 944.800 kb on + strand at 944.945 kb on - strand, within ABID97_RS04550 at 944.945 kb on - strand, within ABID97_RS04550 at 945.128 kb on - strand at 945.250 kb on + strand, within ABID97_RS04550 at 945.250 kb on + strand, within ABID97_RS04550 at 945.251 kb on - strand, within ABID97_RS04550 at 945.251 kb on - strand, within ABID97_RS04550 at 945.251 kb on - strand, within ABID97_RS04550 at 945.324 kb on - strand, within ABID97_RS04550 at 945.324 kb on - strand, within ABID97_RS04550 at 945.352 kb on + strand, within ABID97_RS04550 at 945.352 kb on + strand, within ABID97_RS04550 at 945.352 kb on + strand, within ABID97_RS04550 at 945.352 kb on + strand, within ABID97_RS04550 at 945.353 kb on - strand, within ABID97_RS04550 at 945.553 kb on + strand, within ABID97_RS04550 at 945.659 kb on - strand, within ABID97_RS04550 at 945.718 kb on + strand, within ABID97_RS04550 at 945.718 kb on + strand, within ABID97_RS04550 at 945.871 kb on + strand, within ABID97_RS04550 at 945.871 kb on + strand, within ABID97_RS04550 at 945.872 kb on - strand, within ABID97_RS04550 at 945.872 kb on - strand, within ABID97_RS04550 at 945.964 kb on + strand, within ABID97_RS04550 at 945.995 kb on - strand, within ABID97_RS04550 at 946.048 kb on + strand, within ABID97_RS04550 at 946.048 kb on + strand, within ABID97_RS04550 at 946.049 kb on - strand, within ABID97_RS04550 at 946.049 kb on - strand, within ABID97_RS04550 at 946.049 kb on - strand, within ABID97_RS04550 at 946.222 kb on + strand, within ABID97_RS04550 at 946.222 kb on + strand, within ABID97_RS04550 at 946.223 kb on - strand, within ABID97_RS04550 at 946.846 kb on - strand at 947.358 kb on + strand, within ABID97_RS04555 at 947.358 kb on + strand, within ABID97_RS04555 at 947.358 kb on + strand, within ABID97_RS04555 at 947.358 kb on + strand, within ABID97_RS04555 at 947.359 kb on - strand, within ABID97_RS04555 at 947.586 kb on + strand, within ABID97_RS04555 at 947.587 kb on - strand, within ABID97_RS04555 at 947.620 kb on - strand, within ABID97_RS04555
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 943,701 + ABID97_RS04545 0.57 +0.2 943,731 + ABID97_RS04545 0.59 -0.2 943,731 + ABID97_RS04545 0.59 -0.0 943,732 - ABID97_RS04545 0.59 +0.9 943,732 - ABID97_RS04545 0.59 +0.1 943,732 - ABID97_RS04545 0.59 -1.0 943,732 - ABID97_RS04545 0.59 -0.1 943,732 - ABID97_RS04545 0.59 +0.8 943,734 + ABID97_RS04545 0.59 +0.2 943,734 + ABID97_RS04545 0.59 -0.4 943,735 - ABID97_RS04545 0.59 -0.5 943,735 - ABID97_RS04545 0.59 +0.0 943,803 + ABID97_RS04545 0.62 +0.9 943,938 + ABID97_RS04545 0.68 -0.1 943,938 + ABID97_RS04545 0.68 +0.1 943,948 - ABID97_RS04545 0.69 -0.0 943,948 - ABID97_RS04545 0.69 +0.5 944,073 + ABID97_RS04545 0.75 +0.1 944,074 - ABID97_RS04545 0.75 -0.3 944,074 - ABID97_RS04545 0.75 +0.6 944,074 - ABID97_RS04545 0.75 -0.5 944,074 - ABID97_RS04545 0.75 -0.9 944,074 - ABID97_RS04545 0.75 +0.2 944,074 - ABID97_RS04545 0.75 -0.2 944,074 - ABID97_RS04545 0.75 +0.5 944,325 + ABID97_RS04545 0.86 -0.2 944,403 + -0.6 944,403 + +1.5 944,404 - -0.2 944,738 - -0.3 944,771 - -0.5 944,800 + +0.6 944,945 - ABID97_RS04550 0.15 -0.9 944,945 - ABID97_RS04550 0.15 +0.2 945,128 - +3.2 945,250 + ABID97_RS04550 0.29 -0.0 945,250 + ABID97_RS04550 0.29 -0.4 945,251 - ABID97_RS04550 0.29 +0.1 945,251 - ABID97_RS04550 0.29 -0.3 945,251 - ABID97_RS04550 0.29 +0.4 945,324 - ABID97_RS04550 0.33 -0.2 945,324 - ABID97_RS04550 0.33 -0.3 945,352 + ABID97_RS04550 0.34 -0.1 945,352 + ABID97_RS04550 0.34 -0.8 945,352 + ABID97_RS04550 0.34 +0.0 945,352 + ABID97_RS04550 0.34 -1.3 945,353 - ABID97_RS04550 0.34 -0.1 945,553 + ABID97_RS04550 0.43 +0.1 945,659 - ABID97_RS04550 0.48 +0.4 945,718 + ABID97_RS04550 0.51 -0.2 945,718 + ABID97_RS04550 0.51 -0.2 945,871 + ABID97_RS04550 0.58 +0.1 945,871 + ABID97_RS04550 0.58 +0.0 945,872 - ABID97_RS04550 0.58 -0.5 945,872 - ABID97_RS04550 0.58 -1.1 945,964 + ABID97_RS04550 0.62 -0.5 945,995 - ABID97_RS04550 0.63 -0.2 946,048 + ABID97_RS04550 0.66 -0.3 946,048 + ABID97_RS04550 0.66 -0.7 946,049 - ABID97_RS04550 0.66 +0.1 946,049 - ABID97_RS04550 0.66 -0.3 946,049 - ABID97_RS04550 0.66 -0.4 946,222 + ABID97_RS04550 0.74 -0.3 946,222 + ABID97_RS04550 0.74 +0.9 946,223 - ABID97_RS04550 0.74 +0.2 946,846 - +0.5 947,358 + ABID97_RS04555 0.33 -0.1 947,358 + ABID97_RS04555 0.33 +0.5 947,358 + ABID97_RS04555 0.33 -0.2 947,358 + ABID97_RS04555 0.33 +0.6 947,359 - ABID97_RS04555 0.33 +0.0 947,586 + ABID97_RS04555 0.47 +0.3 947,587 - ABID97_RS04555 0.47 +0.4 947,620 - ABID97_RS04555 0.49 +1.1
Or see this region's nucleotide sequence