Strain Fitness in Variovorax sp. OAS795 around ABID97_RS03490

Experiment: D-Mannose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS03480 and ABID97_RS03485 overlap by 4 nucleotidesABID97_RS03485 and ABID97_RS03490 are separated by 45 nucleotidesABID97_RS03490 and ABID97_RS03495 overlap by 46 nucleotidesABID97_RS03495 and ABID97_RS03500 are separated by 19 nucleotides ABID97_RS03480: ABID97_RS03480 - glycosyltransferase family 2 protein, at 710,096 to 711,073 _RS03480 ABID97_RS03485: ABID97_RS03485 - GtrA family protein, at 711,070 to 711,459 _RS03485 ABID97_RS03490: ABID97_RS03490 - amidohydrolase family protein, at 711,505 to 712,704 _RS03490 ABID97_RS03495: ABID97_RS03495 - TetR family transcriptional regulator, at 712,659 to 713,423 _RS03495 ABID97_RS03500: ABID97_RS03500 - ferredoxin--NADP reductase, at 713,443 to 714,216 _RS03500 Position (kb) 711 712 713Strain fitness (log2 ratio) -1 0 1 2at 710.691 kb on - strand, within ABID97_RS03480at 710.691 kb on - strand, within ABID97_RS03480at 710.711 kb on + strand, within ABID97_RS03480at 710.711 kb on + strand, within ABID97_RS03480at 710.711 kb on + strand, within ABID97_RS03480at 710.711 kb on + strand, within ABID97_RS03480at 710.712 kb on - strand, within ABID97_RS03480at 710.712 kb on - strand, within ABID97_RS03480at 710.712 kb on - strand, within ABID97_RS03480at 710.888 kb on + strand, within ABID97_RS03480at 710.889 kb on - strandat 710.889 kb on - strand, within ABID97_RS03480at 710.889 kb on - strand, within ABID97_RS03480at 710.889 kb on - strand, within ABID97_RS03480at 710.889 kb on - strand, within ABID97_RS03480at 710.889 kb on - strand, within ABID97_RS03480at 711.145 kb on + strand, within ABID97_RS03485at 711.145 kb on + strand, within ABID97_RS03485at 711.145 kb on + strand, within ABID97_RS03485at 711.146 kb on - strand, within ABID97_RS03485at 711.146 kb on - strand, within ABID97_RS03485at 711.146 kb on - strand, within ABID97_RS03485at 711.235 kb on + strand, within ABID97_RS03485at 711.236 kb on - strand, within ABID97_RS03485at 711.280 kb on + strand, within ABID97_RS03485at 711.281 kb on - strand, within ABID97_RS03485at 711.281 kb on - strand, within ABID97_RS03485at 711.325 kb on + strand, within ABID97_RS03485at 711.326 kb on - strand, within ABID97_RS03485at 711.326 kb on - strand, within ABID97_RS03485at 711.326 kb on - strand, within ABID97_RS03485at 711.326 kb on - strand, within ABID97_RS03485at 711.334 kb on + strand, within ABID97_RS03485at 711.334 kb on + strand, within ABID97_RS03485at 711.334 kb on + strand, within ABID97_RS03485at 711.334 kb on + strand, within ABID97_RS03485at 711.334 kb on + strand, within ABID97_RS03485at 711.334 kb on + strand, within ABID97_RS03485at 711.335 kb on - strand, within ABID97_RS03485at 711.335 kb on - strand, within ABID97_RS03485at 711.335 kb on - strand, within ABID97_RS03485at 711.436 kb on + strandat 712.121 kb on + strand, within ABID97_RS03490at 712.122 kb on - strand, within ABID97_RS03490at 712.158 kb on - strand, within ABID97_RS03490at 712.660 kb on + strandat 712.661 kb on - strandat 712.661 kb on - strandat 712.877 kb on - strand, within ABID97_RS03495at 712.877 kb on - strand, within ABID97_RS03495at 712.882 kb on + strand, within ABID97_RS03495at 712.882 kb on + strand, within ABID97_RS03495at 712.883 kb on - strand, within ABID97_RS03495at 712.907 kb on - strand, within ABID97_RS03495at 712.907 kb on - strand, within ABID97_RS03495at 713.089 kb on + strand, within ABID97_RS03495at 713.185 kb on + strand, within ABID97_RS03495at 713.185 kb on + strand, within ABID97_RS03495at 713.185 kb on + strand, within ABID97_RS03495at 713.185 kb on + strand, within ABID97_RS03495at 713.185 kb on + strand, within ABID97_RS03495at 713.185 kb on + strand, within ABID97_RS03495at 713.186 kb on - strand, within ABID97_RS03495at 713.186 kb on - strand, within ABID97_RS03495at 713.186 kb on - strand, within ABID97_RS03495at 713.233 kb on + strand, within ABID97_RS03495at 713.233 kb on + strand, within ABID97_RS03495at 713.234 kb on - strand, within ABID97_RS03495at 713.234 kb on - strand, within ABID97_RS03495at 713.237 kb on - strand, within ABID97_RS03495at 713.239 kb on + strand, within ABID97_RS03495at 713.239 kb on + strand, within ABID97_RS03495at 713.239 kb on + strand, within ABID97_RS03495at 713.239 kb on + strand, within ABID97_RS03495at 713.240 kb on - strand, within ABID97_RS03495at 713.240 kb on - strand, within ABID97_RS03495at 713.240 kb on - strand, within ABID97_RS03495at 713.300 kb on - strand, within ABID97_RS03495at 713.444 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
remove
710,691 - ABID97_RS03480 0.61 -0.2
710,691 - ABID97_RS03480 0.61 -0.3
710,711 + ABID97_RS03480 0.63 +0.1
710,711 + ABID97_RS03480 0.63 +0.5
710,711 + ABID97_RS03480 0.63 -0.5
710,711 + ABID97_RS03480 0.63 -0.3
710,712 - ABID97_RS03480 0.63 -0.3
710,712 - ABID97_RS03480 0.63 -0.5
710,712 - ABID97_RS03480 0.63 +1.3
710,888 + ABID97_RS03480 0.81 +0.3
710,889 - +2.3
710,889 - ABID97_RS03480 0.81 +0.7
710,889 - ABID97_RS03480 0.81 -0.6
710,889 - ABID97_RS03480 0.81 -0.4
710,889 - ABID97_RS03480 0.81 -0.1
710,889 - ABID97_RS03480 0.81 -0.4
711,145 + ABID97_RS03485 0.19 +0.9
711,145 + ABID97_RS03485 0.19 +0.7
711,145 + ABID97_RS03485 0.19 +1.2
711,146 - ABID97_RS03485 0.19 +1.5
711,146 - ABID97_RS03485 0.19 +1.2
711,146 - ABID97_RS03485 0.19 +1.8
711,235 + ABID97_RS03485 0.42 +0.9
711,236 - ABID97_RS03485 0.43 +1.3
711,280 + ABID97_RS03485 0.54 +1.2
711,281 - ABID97_RS03485 0.54 +1.2
711,281 - ABID97_RS03485 0.54 +1.2
711,325 + ABID97_RS03485 0.65 +1.0
711,326 - ABID97_RS03485 0.66 +1.5
711,326 - ABID97_RS03485 0.66 +1.1
711,326 - ABID97_RS03485 0.66 +1.2
711,326 - ABID97_RS03485 0.66 +1.8
711,334 + ABID97_RS03485 0.68 +2.4
711,334 + ABID97_RS03485 0.68 +1.1
711,334 + ABID97_RS03485 0.68 +1.2
711,334 + ABID97_RS03485 0.68 -1.7
711,334 + ABID97_RS03485 0.68 +1.3
711,334 + ABID97_RS03485 0.68 +1.3
711,335 - ABID97_RS03485 0.68 +1.3
711,335 - ABID97_RS03485 0.68 +0.3
711,335 - ABID97_RS03485 0.68 +1.3
711,436 + +1.1
712,121 + ABID97_RS03490 0.51 +0.4
712,122 - ABID97_RS03490 0.51 +0.2
712,158 - ABID97_RS03490 0.54 +0.2
712,660 + -0.3
712,661 - +0.4
712,661 - -0.3
712,877 - ABID97_RS03495 0.28 +0.7
712,877 - ABID97_RS03495 0.28 -0.2
712,882 + ABID97_RS03495 0.29 +1.4
712,882 + ABID97_RS03495 0.29 -0.1
712,883 - ABID97_RS03495 0.29 -0.7
712,907 - ABID97_RS03495 0.32 -0.6
712,907 - ABID97_RS03495 0.32 -0.5
713,089 + ABID97_RS03495 0.56 +0.1
713,185 + ABID97_RS03495 0.69 +0.2
713,185 + ABID97_RS03495 0.69 +0.1
713,185 + ABID97_RS03495 0.69 -0.6
713,185 + ABID97_RS03495 0.69 -0.5
713,185 + ABID97_RS03495 0.69 -0.7
713,185 + ABID97_RS03495 0.69 -0.3
713,186 - ABID97_RS03495 0.69 +1.0
713,186 - ABID97_RS03495 0.69 -0.4
713,186 - ABID97_RS03495 0.69 -1.6
713,233 + ABID97_RS03495 0.75 -0.2
713,233 + ABID97_RS03495 0.75 -0.9
713,234 - ABID97_RS03495 0.75 -0.4
713,234 - ABID97_RS03495 0.75 +0.5
713,237 - ABID97_RS03495 0.76 -0.3
713,239 + ABID97_RS03495 0.76 -0.6
713,239 + ABID97_RS03495 0.76 +0.1
713,239 + ABID97_RS03495 0.76 -0.9
713,239 + ABID97_RS03495 0.76 -0.1
713,240 - ABID97_RS03495 0.76 -0.7
713,240 - ABID97_RS03495 0.76 -1.4
713,240 - ABID97_RS03495 0.76 -0.8
713,300 - ABID97_RS03495 0.84 -1.2
713,444 + -0.8

Or see this region's nucleotide sequence