Strain Fitness in Variovorax sp. OAS795 around ABID97_RS03115

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS03110 and ABID97_RS03115 are separated by 128 nucleotidesABID97_RS03115 and ABID97_RS03120 are separated by 35 nucleotides ABID97_RS03110: ABID97_RS03110 - helix-turn-helix transcriptional regulator, at 630,016 to 630,960 _RS03110 ABID97_RS03115: ABID97_RS03115 - 2,3-epoxybenzoyl-CoA dihydrolase, at 631,089 to 632,765 _RS03115 ABID97_RS03120: ABID97_RS03120 - benzoyl-CoA 2,3-epoxidase subunit BoxB, at 632,801 to 634,228 _RS03120 Position (kb) 631 632 633Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 630.221 kb on - strand, within ABID97_RS03110at 630.643 kb on + strand, within ABID97_RS03110at 630.643 kb on + strand, within ABID97_RS03110at 630.644 kb on - strand, within ABID97_RS03110at 630.644 kb on - strand, within ABID97_RS03110at 630.644 kb on - strand, within ABID97_RS03110at 630.856 kb on + strand, within ABID97_RS03110at 630.856 kb on + strand, within ABID97_RS03110at 630.856 kb on + strand, within ABID97_RS03110at 630.856 kb on + strand, within ABID97_RS03110at 630.856 kb on + strand, within ABID97_RS03110at 630.856 kb on + strand, within ABID97_RS03110at 630.857 kb on - strand, within ABID97_RS03110at 631.131 kb on + strandat 631.152 kb on + strandat 631.152 kb on + strandat 631.152 kb on + strandat 631.152 kb on + strandat 631.152 kb on + strandat 631.153 kb on - strandat 631.153 kb on - strandat 631.153 kb on - strandat 631.153 kb on - strandat 631.153 kb on - strandat 631.236 kb on + strandat 631.257 kb on + strand, within ABID97_RS03115at 631.258 kb on - strand, within ABID97_RS03115at 631.258 kb on - strand, within ABID97_RS03115at 631.615 kb on + strand, within ABID97_RS03115at 631.888 kb on - strand, within ABID97_RS03115at 632.301 kb on + strand, within ABID97_RS03115at 632.301 kb on + strand, within ABID97_RS03115at 632.301 kb on + strand, within ABID97_RS03115at 632.302 kb on - strand, within ABID97_RS03115at 632.302 kb on - strand, within ABID97_RS03115at 632.302 kb on - strand, within ABID97_RS03115at 632.415 kb on + strand, within ABID97_RS03115at 632.817 kb on - strandat 632.951 kb on + strand, within ABID97_RS03120at 632.952 kb on - strand, within ABID97_RS03120at 632.952 kb on - strand, within ABID97_RS03120at 633.178 kb on - strand, within ABID97_RS03120at 633.178 kb on - strand, within ABID97_RS03120at 633.218 kb on + strand, within ABID97_RS03120at 633.218 kb on + strand, within ABID97_RS03120at 633.218 kb on + strand, within ABID97_RS03120at 633.218 kb on + strand, within ABID97_RS03120at 633.219 kb on - strand, within ABID97_RS03120at 633.219 kb on - strand, within ABID97_RS03120at 633.219 kb on - strand, within ABID97_RS03120at 633.219 kb on - strand, within ABID97_RS03120at 633.281 kb on + strand, within ABID97_RS03120at 633.281 kb on + strand, within ABID97_RS03120at 633.282 kb on - strand, within ABID97_RS03120at 633.282 kb on - strand, within ABID97_RS03120at 633.282 kb on - strand, within ABID97_RS03120at 633.428 kb on + strand, within ABID97_RS03120at 633.429 kb on - strand, within ABID97_RS03120at 633.680 kb on + strand, within ABID97_RS03120at 633.680 kb on + strand, within ABID97_RS03120at 633.680 kb on + strand, within ABID97_RS03120at 633.680 kb on + strand, within ABID97_RS03120at 633.737 kb on + strand, within ABID97_RS03120at 633.737 kb on + strand, within ABID97_RS03120at 633.737 kb on + strand, within ABID97_RS03120

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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630,221 - ABID97_RS03110 0.22 -2.8
630,643 + ABID97_RS03110 0.66 -2.6
630,643 + ABID97_RS03110 0.66 -2.1
630,644 - ABID97_RS03110 0.66 -3.5
630,644 - ABID97_RS03110 0.66 -1.3
630,644 - ABID97_RS03110 0.66 +0.5
630,856 + ABID97_RS03110 0.89 -3.4
630,856 + ABID97_RS03110 0.89 -3.0
630,856 + ABID97_RS03110 0.89 -0.9
630,856 + ABID97_RS03110 0.89 -1.4
630,856 + ABID97_RS03110 0.89 -1.6
630,856 + ABID97_RS03110 0.89 -0.1
630,857 - ABID97_RS03110 0.89 -0.2
631,131 + -1.2
631,152 + -0.1
631,152 + -1.8
631,152 + -1.0
631,152 + +0.5
631,152 + +0.4
631,153 - +2.0
631,153 - -0.7
631,153 - -1.2
631,153 - -0.9
631,153 - -0.6
631,236 + -1.2
631,257 + ABID97_RS03115 0.10 -0.4
631,258 - ABID97_RS03115 0.10 -0.1
631,258 - ABID97_RS03115 0.10 -0.8
631,615 + ABID97_RS03115 0.31 -0.3
631,888 - ABID97_RS03115 0.48 -1.4
632,301 + ABID97_RS03115 0.72 -2.2
632,301 + ABID97_RS03115 0.72 -2.7
632,301 + ABID97_RS03115 0.72 -1.3
632,302 - ABID97_RS03115 0.72 -1.0
632,302 - ABID97_RS03115 0.72 -1.0
632,302 - ABID97_RS03115 0.72 -2.5
632,415 + ABID97_RS03115 0.79 -2.5
632,817 - -0.5
632,951 + ABID97_RS03120 0.11 -1.6
632,952 - ABID97_RS03120 0.11 +0.0
632,952 - ABID97_RS03120 0.11 -0.4
633,178 - ABID97_RS03120 0.26 -1.6
633,178 - ABID97_RS03120 0.26 -0.4
633,218 + ABID97_RS03120 0.29 -0.2
633,218 + ABID97_RS03120 0.29 +0.2
633,218 + ABID97_RS03120 0.29 +0.6
633,218 + ABID97_RS03120 0.29 -0.0
633,219 - ABID97_RS03120 0.29 -0.3
633,219 - ABID97_RS03120 0.29 -0.5
633,219 - ABID97_RS03120 0.29 -0.1
633,219 - ABID97_RS03120 0.29 -0.3
633,281 + ABID97_RS03120 0.34 -0.6
633,281 + ABID97_RS03120 0.34 -2.2
633,282 - ABID97_RS03120 0.34 +0.2
633,282 - ABID97_RS03120 0.34 -0.8
633,282 - ABID97_RS03120 0.34 -0.2
633,428 + ABID97_RS03120 0.44 -0.3
633,429 - ABID97_RS03120 0.44 -0.5
633,680 + ABID97_RS03120 0.62 -0.4
633,680 + ABID97_RS03120 0.62 -3.1
633,680 + ABID97_RS03120 0.62 +0.0
633,680 + ABID97_RS03120 0.62 +0.1
633,737 + ABID97_RS03120 0.66 -1.0
633,737 + ABID97_RS03120 0.66 -0.3
633,737 + ABID97_RS03120 0.66 -0.0

Or see this region's nucleotide sequence