Strain Fitness in Variovorax sp. OAS795 around ABID97_RS03095

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS03085 and ABID97_RS03090 overlap by 4 nucleotidesABID97_RS03090 and ABID97_RS03095 are separated by 136 nucleotidesABID97_RS03095 and ABID97_RS03100 are separated by 25 nucleotides ABID97_RS03085: ABID97_RS03085 - ABC transporter substrate-binding protein, at 624,110 to 625,282 _RS03085 ABID97_RS03090: ABID97_RS03090 - alpha/beta hydrolase, at 625,279 to 626,082 _RS03090 ABID97_RS03095: ABID97_RS03095 - benzoate-CoA ligase family protein, at 626,219 to 627,769 _RS03095 ABID97_RS03100: ABID97_RS03100 - 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase, at 627,795 to 629,345 _RS03100 Position (kb) 626 627 628Strain fitness (log2 ratio) -2 -1 0 1at 625.718 kb on + strand, within ABID97_RS03090at 625.880 kb on + strand, within ABID97_RS03090at 625.880 kb on + strand, within ABID97_RS03090at 626.152 kb on + strandat 626.313 kb on + strandat 626.313 kb on + strandat 626.319 kb on + strandat 626.320 kb on - strandat 626.320 kb on - strandat 626.502 kb on + strand, within ABID97_RS03095at 626.502 kb on + strand, within ABID97_RS03095at 626.502 kb on + strand, within ABID97_RS03095at 626.503 kb on - strand, within ABID97_RS03095at 626.503 kb on - strand, within ABID97_RS03095at 626.503 kb on - strand, within ABID97_RS03095at 626.503 kb on - strand, within ABID97_RS03095at 626.544 kb on + strand, within ABID97_RS03095at 626.544 kb on + strand, within ABID97_RS03095at 626.544 kb on + strand, within ABID97_RS03095at 626.551 kb on - strand, within ABID97_RS03095at 626.551 kb on - strand, within ABID97_RS03095at 626.574 kb on + strand, within ABID97_RS03095at 626.574 kb on + strand, within ABID97_RS03095at 626.575 kb on - strand, within ABID97_RS03095at 626.640 kb on + strand, within ABID97_RS03095at 626.640 kb on + strand, within ABID97_RS03095at 626.641 kb on - strand, within ABID97_RS03095at 626.671 kb on - strand, within ABID97_RS03095at 626.733 kb on + strand, within ABID97_RS03095at 626.733 kb on + strand, within ABID97_RS03095at 627.111 kb on + strand, within ABID97_RS03095at 627.112 kb on - strand, within ABID97_RS03095at 627.171 kb on + strand, within ABID97_RS03095at 627.246 kb on + strand, within ABID97_RS03095at 627.247 kb on - strand, within ABID97_RS03095at 627.474 kb on + strand, within ABID97_RS03095at 627.474 kb on + strand, within ABID97_RS03095at 627.474 kb on + strand, within ABID97_RS03095at 627.474 kb on + strand, within ABID97_RS03095at 627.474 kb on + strand, within ABID97_RS03095at 627.474 kb on + strand, within ABID97_RS03095at 627.531 kb on + strand, within ABID97_RS03095at 627.531 kb on + strand, within ABID97_RS03095at 627.532 kb on - strand, within ABID97_RS03095at 627.690 kb on + strandat 627.690 kb on + strandat 627.690 kb on + strandat 627.690 kb on + strandat 627.853 kb on + strandat 627.853 kb on + strandat 627.854 kb on - strandat 627.854 kb on - strandat 628.114 kb on + strand, within ABID97_RS03100at 628.261 kb on + strand, within ABID97_RS03100at 628.261 kb on + strand, within ABID97_RS03100at 628.261 kb on + strand, within ABID97_RS03100at 628.261 kb on + strand, within ABID97_RS03100

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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625,718 + ABID97_RS03090 0.55 -1.4
625,880 + ABID97_RS03090 0.75 -0.8
625,880 + ABID97_RS03090 0.75 -0.1
626,152 + -0.5
626,313 + +0.2
626,313 + -0.4
626,319 + +1.1
626,320 - -0.8
626,320 - +0.4
626,502 + ABID97_RS03095 0.18 -0.6
626,502 + ABID97_RS03095 0.18 +0.4
626,502 + ABID97_RS03095 0.18 -0.6
626,503 - ABID97_RS03095 0.18 -2.0
626,503 - ABID97_RS03095 0.18 -0.3
626,503 - ABID97_RS03095 0.18 +0.3
626,503 - ABID97_RS03095 0.18 -0.4
626,544 + ABID97_RS03095 0.21 +0.5
626,544 + ABID97_RS03095 0.21 +0.0
626,544 + ABID97_RS03095 0.21 -0.5
626,551 - ABID97_RS03095 0.21 -0.5
626,551 - ABID97_RS03095 0.21 -0.4
626,574 + ABID97_RS03095 0.23 -2.1
626,574 + ABID97_RS03095 0.23 -0.3
626,575 - ABID97_RS03095 0.23 -0.0
626,640 + ABID97_RS03095 0.27 -1.2
626,640 + ABID97_RS03095 0.27 -0.6
626,641 - ABID97_RS03095 0.27 -0.5
626,671 - ABID97_RS03095 0.29 -0.7
626,733 + ABID97_RS03095 0.33 -0.0
626,733 + ABID97_RS03095 0.33 -0.9
627,111 + ABID97_RS03095 0.58 +0.4
627,112 - ABID97_RS03095 0.58 +0.3
627,171 + ABID97_RS03095 0.61 -0.0
627,246 + ABID97_RS03095 0.66 -0.3
627,247 - ABID97_RS03095 0.66 +0.2
627,474 + ABID97_RS03095 0.81 -0.2
627,474 + ABID97_RS03095 0.81 +0.0
627,474 + ABID97_RS03095 0.81 -0.8
627,474 + ABID97_RS03095 0.81 -2.5
627,474 + ABID97_RS03095 0.81 -0.9
627,474 + ABID97_RS03095 0.81 -0.2
627,531 + ABID97_RS03095 0.85 -0.5
627,531 + ABID97_RS03095 0.85 -0.1
627,532 - ABID97_RS03095 0.85 -0.4
627,690 + -0.7
627,690 + -0.2
627,690 + -0.2
627,690 + -0.2
627,853 + -1.7
627,853 + -2.1
627,854 - -1.9
627,854 - -1.4
628,114 + ABID97_RS03100 0.21 -0.7
628,261 + ABID97_RS03100 0.30 -0.5
628,261 + ABID97_RS03100 0.30 -0.2
628,261 + ABID97_RS03100 0.30 -0.5
628,261 + ABID97_RS03100 0.30 -0.0

Or see this region's nucleotide sequence