Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02935

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS02930 and ABID97_RS02935 are separated by 104 nucleotidesABID97_RS02935 and ABID97_RS02940 are separated by 75 nucleotides ABID97_RS02930: ABID97_RS02930 - ParB/RepB/Spo0J family partition protein, at 597,199 to 598,146 _RS02930 ABID97_RS02935: ABID97_RS02935 - CsgG/HfaB family protein, at 598,251 to 599,147 _RS02935 ABID97_RS02940: ABID97_RS02940 - FAD-linked oxidase C-terminal domain-containing protein, at 599,223 to 600,647 _RS02940 Position (kb) 598 599 600Strain fitness (log2 ratio) -2 -1 0 1 2at 598.144 kb on + strandat 598.144 kb on + strandat 598.144 kb on + strandat 598.144 kb on + strandat 598.144 kb on + strandat 598.145 kb on - strandat 598.145 kb on - strandat 598.145 kb on - strandat 598.196 kb on + strandat 598.197 kb on - strandat 598.230 kb on - strandat 598.230 kb on - strandat 598.473 kb on + strand, within ABID97_RS02935at 598.473 kb on + strand, within ABID97_RS02935at 598.473 kb on + strand, within ABID97_RS02935at 598.474 kb on - strand, within ABID97_RS02935at 598.941 kb on + strand, within ABID97_RS02935at 598.942 kb on - strand, within ABID97_RS02935at 599.022 kb on + strand, within ABID97_RS02935at 599.022 kb on + strand, within ABID97_RS02935at 599.022 kb on + strand, within ABID97_RS02935at 599.022 kb on + strand, within ABID97_RS02935at 599.022 kb on + strand, within ABID97_RS02935at 599.022 kb on + strand, within ABID97_RS02935at 599.022 kb on + strand, within ABID97_RS02935at 599.023 kb on - strand, within ABID97_RS02935at 599.023 kb on - strand, within ABID97_RS02935at 599.023 kb on - strand, within ABID97_RS02935at 599.023 kb on - strand, within ABID97_RS02935at 599.023 kb on - strand, within ABID97_RS02935at 599.023 kb on - strand, within ABID97_RS02935at 599.023 kb on - strand, within ABID97_RS02935at 599.023 kb on - strand, within ABID97_RS02935at 599.023 kb on - strand, within ABID97_RS02935at 599.023 kb on - strand, within ABID97_RS02935at 599.023 kb on - strand, within ABID97_RS02935at 599.023 kb on - strand, within ABID97_RS02935at 599.106 kb on + strandat 599.106 kb on + strandat 599.106 kb on + strandat 599.106 kb on + strandat 599.106 kb on + strandat 599.107 kb on - strandat 599.107 kb on - strandat 599.107 kb on - strandat 599.107 kb on - strandat 599.107 kb on - strandat 599.145 kb on + strandat 599.145 kb on + strandat 599.145 kb on + strandat 599.145 kb on + strandat 599.145 kb on + strandat 599.146 kb on - strandat 599.146 kb on - strandat 599.146 kb on - strandat 599.146 kb on - strandat 599.146 kb on - strandat 599.506 kb on + strand, within ABID97_RS02940at 599.506 kb on + strand, within ABID97_RS02940at 599.506 kb on + strand, within ABID97_RS02940at 599.507 kb on - strand, within ABID97_RS02940at 599.507 kb on - strand, within ABID97_RS02940at 599.507 kb on - strand, within ABID97_RS02940at 599.507 kb on - strand, within ABID97_RS02940at 599.507 kb on - strand, within ABID97_RS02940at 599.507 kb on - strand, within ABID97_RS02940at 599.632 kb on + strand, within ABID97_RS02940at 599.632 kb on + strand, within ABID97_RS02940at 599.633 kb on - strand, within ABID97_RS02940at 599.633 kb on - strand, within ABID97_RS02940at 599.815 kb on + strand, within ABID97_RS02940at 599.815 kb on + strand, within ABID97_RS02940at 599.815 kb on + strand, within ABID97_RS02940at 599.965 kb on + strand, within ABID97_RS02940at 599.965 kb on + strand, within ABID97_RS02940at 599.965 kb on + strand, within ABID97_RS02940at 599.966 kb on - strand, within ABID97_RS02940at 599.966 kb on - strand, within ABID97_RS02940at 599.966 kb on - strand, within ABID97_RS02940at 599.966 kb on - strand, within ABID97_RS02940at 599.966 kb on - strand, within ABID97_RS02940

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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598,144 + -0.0
598,144 + -0.1
598,144 + -0.2
598,144 + -0.1
598,144 + +0.2
598,145 - -0.1
598,145 - -0.6
598,145 - -0.3
598,196 + +0.0
598,197 - +0.1
598,230 - +0.4
598,230 - -0.2
598,473 + ABID97_RS02935 0.25 -0.4
598,473 + ABID97_RS02935 0.25 +0.0
598,473 + ABID97_RS02935 0.25 +0.8
598,474 - ABID97_RS02935 0.25 +0.2
598,941 + ABID97_RS02935 0.77 +0.4
598,942 - ABID97_RS02935 0.77 -0.6
599,022 + ABID97_RS02935 0.86 -0.2
599,022 + ABID97_RS02935 0.86 -0.5
599,022 + ABID97_RS02935 0.86 -0.5
599,022 + ABID97_RS02935 0.86 +0.2
599,022 + ABID97_RS02935 0.86 -0.3
599,022 + ABID97_RS02935 0.86 -1.0
599,022 + ABID97_RS02935 0.86 +0.1
599,023 - ABID97_RS02935 0.86 +0.2
599,023 - ABID97_RS02935 0.86 +0.0
599,023 - ABID97_RS02935 0.86 -0.2
599,023 - ABID97_RS02935 0.86 -0.6
599,023 - ABID97_RS02935 0.86 -0.4
599,023 - ABID97_RS02935 0.86 -0.4
599,023 - ABID97_RS02935 0.86 -0.3
599,023 - ABID97_RS02935 0.86 -0.8
599,023 - ABID97_RS02935 0.86 -0.1
599,023 - ABID97_RS02935 0.86 -0.2
599,023 - ABID97_RS02935 0.86 -0.5
599,023 - ABID97_RS02935 0.86 +0.4
599,106 + +0.1
599,106 + +0.2
599,106 + +0.2
599,106 + +0.1
599,106 + -0.0
599,107 - -0.2
599,107 - +0.6
599,107 - +0.4
599,107 - +0.8
599,107 - -0.5
599,145 + +0.1
599,145 + -0.2
599,145 + +0.1
599,145 + +0.2
599,145 + -0.3
599,146 - -0.1
599,146 - +0.3
599,146 - -0.3
599,146 - -0.9
599,146 - -0.3
599,506 + ABID97_RS02940 0.20 +2.0
599,506 + ABID97_RS02940 0.20 +0.1
599,506 + ABID97_RS02940 0.20 -0.1
599,507 - ABID97_RS02940 0.20 +0.0
599,507 - ABID97_RS02940 0.20 -0.3
599,507 - ABID97_RS02940 0.20 -0.3
599,507 - ABID97_RS02940 0.20 +0.1
599,507 - ABID97_RS02940 0.20 -0.4
599,507 - ABID97_RS02940 0.20 -0.2
599,632 + ABID97_RS02940 0.29 -0.1
599,632 + ABID97_RS02940 0.29 +0.0
599,633 - ABID97_RS02940 0.29 -0.3
599,633 - ABID97_RS02940 0.29 +0.5
599,815 + ABID97_RS02940 0.42 +0.1
599,815 + ABID97_RS02940 0.42 -0.5
599,815 + ABID97_RS02940 0.42 -1.2
599,965 + ABID97_RS02940 0.52 -2.4
599,965 + ABID97_RS02940 0.52 +0.0
599,965 + ABID97_RS02940 0.52 +0.6
599,966 - ABID97_RS02940 0.52 -1.4
599,966 - ABID97_RS02940 0.52 -0.3
599,966 - ABID97_RS02940 0.52 +0.0
599,966 - ABID97_RS02940 0.52 +0.4
599,966 - ABID97_RS02940 0.52 +0.5

Or see this region's nucleotide sequence