Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02745

Experiment: D-Mannose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS02735 and ABID97_RS02740 are separated by 77 nucleotidesABID97_RS02740 and ABID97_RS02745 are separated by 146 nucleotidesABID97_RS02745 and ABID97_RS02750 are separated by 95 nucleotides ABID97_RS02735: ABID97_RS02735 - serine/threonine protein kinase, at 557,881 to 558,309 _RS02735 ABID97_RS02740: ABID97_RS02740 - Spy/CpxP family protein refolding chaperone, at 558,387 to 558,947 _RS02740 ABID97_RS02745: ABID97_RS02745 - flavodoxin family protein, at 559,094 to 560,185 _RS02745 ABID97_RS02750: ABID97_RS02750 - pirin family protein, at 560,281 to 561,180 _RS02750 Position (kb) 559 560 561Strain fitness (log2 ratio) -2 -1 0 1 2at 558.307 kb on + strandat 558.359 kb on - strandat 558.359 kb on - strandat 558.505 kb on + strand, within ABID97_RS02740at 558.505 kb on + strand, within ABID97_RS02740at 558.505 kb on + strand, within ABID97_RS02740at 558.505 kb on + strand, within ABID97_RS02740at 558.506 kb on - strand, within ABID97_RS02740at 558.506 kb on - strand, within ABID97_RS02740at 559.022 kb on + strandat 559.022 kb on + strandat 559.022 kb on + strandat 559.055 kb on - strandat 559.055 kb on - strandat 559.055 kb on - strandat 559.095 kb on + strandat 559.245 kb on + strand, within ABID97_RS02745at 559.245 kb on + strand, within ABID97_RS02745at 559.246 kb on - strand, within ABID97_RS02745at 559.246 kb on - strand, within ABID97_RS02745at 559.254 kb on + strand, within ABID97_RS02745at 559.254 kb on + strand, within ABID97_RS02745at 559.254 kb on + strand, within ABID97_RS02745at 559.254 kb on + strand, within ABID97_RS02745at 559.255 kb on - strand, within ABID97_RS02745at 559.255 kb on - strand, within ABID97_RS02745at 559.255 kb on - strand, within ABID97_RS02745at 559.266 kb on + strand, within ABID97_RS02745at 559.266 kb on + strand, within ABID97_RS02745at 559.267 kb on - strand, within ABID97_RS02745at 559.384 kb on - strand, within ABID97_RS02745at 559.596 kb on + strand, within ABID97_RS02745at 559.596 kb on + strand, within ABID97_RS02745at 559.596 kb on + strand, within ABID97_RS02745at 559.596 kb on + strandat 559.597 kb on - strand, within ABID97_RS02745at 559.597 kb on - strand, within ABID97_RS02745at 559.597 kb on - strand, within ABID97_RS02745at 559.709 kb on - strand, within ABID97_RS02745at 559.709 kb on - strand, within ABID97_RS02745at 559.972 kb on - strand, within ABID97_RS02745at 560.019 kb on + strand, within ABID97_RS02745at 560.019 kb on + strand, within ABID97_RS02745at 560.020 kb on - strand, within ABID97_RS02745at 560.197 kb on + strandat 560.197 kb on + strandat 560.198 kb on - strandat 560.198 kb on - strandat 560.198 kb on - strandat 560.257 kb on + strandat 560.257 kb on + strandat 560.258 kb on - strandat 560.360 kb on + strandat 560.537 kb on + strand, within ABID97_RS02750at 560.537 kb on + strand, within ABID97_RS02750at 560.538 kb on - strand, within ABID97_RS02750at 560.736 kb on - strand, within ABID97_RS02750at 560.930 kb on + strand, within ABID97_RS02750at 560.930 kb on + strand, within ABID97_RS02750at 560.930 kb on + strand, within ABID97_RS02750at 560.930 kb on + strand, within ABID97_RS02750at 560.931 kb on - strand, within ABID97_RS02750at 560.931 kb on - strand, within ABID97_RS02750at 560.931 kb on - strand, within ABID97_RS02750at 560.931 kb on - strand, within ABID97_RS02750at 560.931 kb on - strand, within ABID97_RS02750at 560.981 kb on + strand, within ABID97_RS02750at 560.982 kb on - strand, within ABID97_RS02750at 560.982 kb on - strand, within ABID97_RS02750

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
remove
558,307 + +0.2
558,359 - +0.5
558,359 - -1.0
558,505 + ABID97_RS02740 0.21 -0.2
558,505 + ABID97_RS02740 0.21 +0.1
558,505 + ABID97_RS02740 0.21 -0.3
558,505 + ABID97_RS02740 0.21 +0.7
558,506 - ABID97_RS02740 0.21 +0.1
558,506 - ABID97_RS02740 0.21 -0.2
559,022 + -0.1
559,022 + +0.2
559,022 + +1.2
559,055 - +0.2
559,055 - +0.8
559,055 - +1.9
559,095 + +1.3
559,245 + ABID97_RS02745 0.14 +0.2
559,245 + ABID97_RS02745 0.14 +0.7
559,246 - ABID97_RS02745 0.14 +0.2
559,246 - ABID97_RS02745 0.14 -0.1
559,254 + ABID97_RS02745 0.15 +0.0
559,254 + ABID97_RS02745 0.15 +0.0
559,254 + ABID97_RS02745 0.15 -0.4
559,254 + ABID97_RS02745 0.15 +0.5
559,255 - ABID97_RS02745 0.15 +0.3
559,255 - ABID97_RS02745 0.15 +0.0
559,255 - ABID97_RS02745 0.15 +0.3
559,266 + ABID97_RS02745 0.16 +0.1
559,266 + ABID97_RS02745 0.16 +0.3
559,267 - ABID97_RS02745 0.16 -0.5
559,384 - ABID97_RS02745 0.27 -2.4
559,596 + ABID97_RS02745 0.46 +0.3
559,596 + ABID97_RS02745 0.46 +0.6
559,596 + ABID97_RS02745 0.46 -0.9
559,596 + +2.0
559,597 - ABID97_RS02745 0.46 +0.1
559,597 - ABID97_RS02745 0.46 +0.8
559,597 - ABID97_RS02745 0.46 +0.3
559,709 - ABID97_RS02745 0.56 -0.3
559,709 - ABID97_RS02745 0.56 -0.4
559,972 - ABID97_RS02745 0.80 -0.0
560,019 + ABID97_RS02745 0.85 -1.5
560,019 + ABID97_RS02745 0.85 +0.6
560,020 - ABID97_RS02745 0.85 -0.4
560,197 + -0.4
560,197 + -0.1
560,198 - -1.0
560,198 - +0.1
560,198 - +0.5
560,257 + -0.2
560,257 + -2.2
560,258 - -1.9
560,360 + -0.2
560,537 + ABID97_RS02750 0.28 -0.1
560,537 + ABID97_RS02750 0.28 +0.7
560,538 - ABID97_RS02750 0.29 -0.3
560,736 - ABID97_RS02750 0.51 +0.1
560,930 + ABID97_RS02750 0.72 -1.5
560,930 + ABID97_RS02750 0.72 +0.1
560,930 + ABID97_RS02750 0.72 -0.4
560,930 + ABID97_RS02750 0.72 -0.2
560,931 - ABID97_RS02750 0.72 +0.3
560,931 - ABID97_RS02750 0.72 -0.1
560,931 - ABID97_RS02750 0.72 +1.2
560,931 - ABID97_RS02750 0.72 -0.3
560,931 - ABID97_RS02750 0.72 +0.1
560,981 + ABID97_RS02750 0.78 +0.1
560,982 - ABID97_RS02750 0.78 +0.2
560,982 - ABID97_RS02750 0.78 -0.2

Or see this region's nucleotide sequence