Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS02440 and ABID97_RS02445 are separated by 63 nucleotides ABID97_RS02445 and ABID97_RS02450 are separated by 135 nucleotides ABID97_RS02450 and ABID97_RS02455 are separated by 23 nucleotides
ABID97_RS02440: ABID97_RS02440 - type I glyceraldehyde-3-phosphate dehydrogenase, at 488,701 to 489,702
_RS02440
ABID97_RS02445: ABID97_RS02445 - transketolase, at 489,766 to 491,874
_RS02445
ABID97_RS02450: ABID97_RS02450 - adenosylmethionine decarboxylase, at 492,010 to 492,390
_RS02450
ABID97_RS02455: ABID97_RS02455 - nucleotidyltransferase family protein, at 492,414 to 493,124
_RS02455
Position (kb) 489
490
491
492 Strain fitness (log2 ratio) -1
0
1 at 489.716 kb on - strand at 489.716 kb on - strand at 491.996 kb on + strand at 491.996 kb on + strand at 491.996 kb on + strand at 491.996 kb on + strand at 491.996 kb on + strand at 492.265 kb on + strand, within ABID97_RS02450 at 492.265 kb on + strand, within ABID97_RS02450 at 492.265 kb on + strand, within ABID97_RS02450 at 492.265 kb on + strand, within ABID97_RS02450 at 492.265 kb on + strand, within ABID97_RS02450 at 492.265 kb on + strand, within ABID97_RS02450 at 492.265 kb on + strand, within ABID97_RS02450 at 492.265 kb on + strand, within ABID97_RS02450 at 492.265 kb on + strand, within ABID97_RS02450 at 492.266 kb on - strand, within ABID97_RS02450 at 492.266 kb on - strand, within ABID97_RS02450 at 492.266 kb on - strand, within ABID97_RS02450 at 492.266 kb on - strand, within ABID97_RS02450 at 492.266 kb on - strand, within ABID97_RS02450 at 492.266 kb on - strand, within ABID97_RS02450 at 492.266 kb on - strand, within ABID97_RS02450 at 492.266 kb on - strand, within ABID97_RS02450 at 492.266 kb on - strand, within ABID97_RS02450
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 489,716 - +0.2 489,716 - +0.3 491,996 + -0.5 491,996 + +0.1 491,996 + +0.1 491,996 + +0.2 491,996 + +0.1 492,265 + ABID97_RS02450 0.67 -0.5 492,265 + ABID97_RS02450 0.67 -0.1 492,265 + ABID97_RS02450 0.67 -0.8 492,265 + ABID97_RS02450 0.67 +0.6 492,265 + ABID97_RS02450 0.67 +0.5 492,265 + ABID97_RS02450 0.67 +0.1 492,265 + ABID97_RS02450 0.67 -0.2 492,265 + ABID97_RS02450 0.67 -0.9 492,265 + ABID97_RS02450 0.67 -0.2 492,266 - ABID97_RS02450 0.67 -0.0 492,266 - ABID97_RS02450 0.67 +0.2 492,266 - ABID97_RS02450 0.67 +0.4 492,266 - ABID97_RS02450 0.67 -0.6 492,266 - ABID97_RS02450 0.67 -0.0 492,266 - ABID97_RS02450 0.67 +0.1 492,266 - ABID97_RS02450 0.67 -0.8 492,266 - ABID97_RS02450 0.67 -0.2 492,266 - ABID97_RS02450 0.67 -0.2
Or see this region's nucleotide sequence