Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02440

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS02430 and ABID97_RS02435 are separated by 19 nucleotidesABID97_RS02435 and ABID97_RS02440 are separated by 74 nucleotidesABID97_RS02440 and ABID97_RS02445 are separated by 63 nucleotides ABID97_RS02430: ABID97_RS02430 - hypothetical protein, at 487,414 to 488,010 _RS02430 ABID97_RS02435: ABID97_RS02435 - hypothetical protein, at 488,030 to 488,626 _RS02435 ABID97_RS02440: ABID97_RS02440 - type I glyceraldehyde-3-phosphate dehydrogenase, at 488,701 to 489,702 _RS02440 ABID97_RS02445: ABID97_RS02445 - transketolase, at 489,766 to 491,874 _RS02445 Position (kb) 488 489 490Strain fitness (log2 ratio) -2 -1 0 1at 487.721 kb on + strand, within ABID97_RS02430at 487.722 kb on - strand, within ABID97_RS02430at 487.729 kb on + strand, within ABID97_RS02430at 487.729 kb on + strand, within ABID97_RS02430at 487.729 kb on + strand, within ABID97_RS02430at 487.867 kb on + strand, within ABID97_RS02430at 487.867 kb on + strand, within ABID97_RS02430at 487.897 kb on + strand, within ABID97_RS02430at 487.897 kb on + strand, within ABID97_RS02430at 487.898 kb on - strand, within ABID97_RS02430at 487.936 kb on + strand, within ABID97_RS02430at 487.972 kb on + strandat 487.973 kb on - strandat 488.177 kb on + strand, within ABID97_RS02435at 488.177 kb on + strand, within ABID97_RS02435at 488.177 kb on + strand, within ABID97_RS02435at 488.177 kb on + strand, within ABID97_RS02435at 488.178 kb on - strand, within ABID97_RS02435at 488.178 kb on - strand, within ABID97_RS02435at 488.246 kb on + strand, within ABID97_RS02435at 488.246 kb on + strand, within ABID97_RS02435at 488.246 kb on + strand, within ABID97_RS02435at 488.246 kb on + strand, within ABID97_RS02435at 488.246 kb on + strand, within ABID97_RS02435at 488.246 kb on + strand, within ABID97_RS02435at 488.246 kb on + strand, within ABID97_RS02435at 488.246 kb on + strand, within ABID97_RS02435at 488.246 kb on + strand, within ABID97_RS02435at 488.246 kb on + strand, within ABID97_RS02435at 488.247 kb on - strand, within ABID97_RS02435at 488.247 kb on - strand, within ABID97_RS02435at 488.247 kb on - strand, within ABID97_RS02435at 488.247 kb on - strand, within ABID97_RS02435at 488.247 kb on - strand, within ABID97_RS02435at 488.247 kb on - strand, within ABID97_RS02435at 488.247 kb on - strand, within ABID97_RS02435at 488.247 kb on - strand, within ABID97_RS02435at 488.247 kb on - strand, within ABID97_RS02435at 488.247 kb on - strand, within ABID97_RS02435at 488.247 kb on - strand, within ABID97_RS02435at 488.247 kb on - strand, within ABID97_RS02435at 488.247 kb on - strand, within ABID97_RS02435at 488.249 kb on + strand, within ABID97_RS02435at 488.249 kb on + strand, within ABID97_RS02435at 488.250 kb on - strand, within ABID97_RS02435at 488.250 kb on - strand, within ABID97_RS02435at 488.301 kb on - strand, within ABID97_RS02435at 488.702 kb on + strandat 488.703 kb on - strandat 489.716 kb on - strandat 489.716 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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487,721 + ABID97_RS02430 0.51 -0.2
487,722 - ABID97_RS02430 0.52 +0.1
487,729 + ABID97_RS02430 0.53 +0.2
487,729 + ABID97_RS02430 0.53 -0.9
487,729 + ABID97_RS02430 0.53 -0.2
487,867 + ABID97_RS02430 0.76 +0.5
487,867 + ABID97_RS02430 0.76 -0.2
487,897 + ABID97_RS02430 0.81 +0.2
487,897 + ABID97_RS02430 0.81 -1.1
487,898 - ABID97_RS02430 0.81 -0.0
487,936 + ABID97_RS02430 0.87 -0.4
487,972 + -1.0
487,973 - -0.4
488,177 + ABID97_RS02435 0.25 -0.3
488,177 + ABID97_RS02435 0.25 +0.2
488,177 + ABID97_RS02435 0.25 -0.4
488,177 + ABID97_RS02435 0.25 +0.9
488,178 - ABID97_RS02435 0.25 +0.5
488,178 - ABID97_RS02435 0.25 +0.2
488,246 + ABID97_RS02435 0.36 -1.9
488,246 + ABID97_RS02435 0.36 -0.0
488,246 + ABID97_RS02435 0.36 +0.3
488,246 + ABID97_RS02435 0.36 +0.4
488,246 + ABID97_RS02435 0.36 -0.4
488,246 + ABID97_RS02435 0.36 +0.1
488,246 + ABID97_RS02435 0.36 +0.6
488,246 + ABID97_RS02435 0.36 -0.1
488,246 + ABID97_RS02435 0.36 -0.6
488,246 + ABID97_RS02435 0.36 +0.4
488,247 - ABID97_RS02435 0.36 +0.9
488,247 - ABID97_RS02435 0.36 -0.2
488,247 - ABID97_RS02435 0.36 -0.2
488,247 - ABID97_RS02435 0.36 +0.0
488,247 - ABID97_RS02435 0.36 -0.0
488,247 - ABID97_RS02435 0.36 +0.2
488,247 - ABID97_RS02435 0.36 +0.4
488,247 - ABID97_RS02435 0.36 -0.2
488,247 - ABID97_RS02435 0.36 -0.1
488,247 - ABID97_RS02435 0.36 +0.0
488,247 - ABID97_RS02435 0.36 +0.0
488,247 - ABID97_RS02435 0.36 -0.4
488,247 - ABID97_RS02435 0.36 +0.1
488,249 + ABID97_RS02435 0.37 +0.4
488,249 + ABID97_RS02435 0.37 -0.0
488,250 - ABID97_RS02435 0.37 -1.5
488,250 - ABID97_RS02435 0.37 -0.5
488,301 - ABID97_RS02435 0.45 -0.1
488,702 + +0.6
488,703 - -0.1
489,716 - +0.2
489,716 - +0.3

Or see this region's nucleotide sequence