Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01535 and ABID97_RS01540 are separated by 11 nucleotides ABID97_RS01540 and ABID97_RS01545 are separated by 13 nucleotides ABID97_RS01545 and ABID97_RS01550 are separated by 214 nucleotides ABID97_RS01550 and ABID97_RS01555 overlap by 4 nucleotides ABID97_RS01555 and ABID97_RS01560 are separated by 25 nucleotides
ABID97_RS01535: ABID97_RS01535 - 50S ribosomal protein L5, at 302,907 to 303,446
_RS01535
ABID97_RS01540: ABID97_RS01540 - 50S ribosomal protein L24, at 303,458 to 303,790
_RS01540
ABID97_RS01545: ABID97_RS01545 - 50S ribosomal protein L14, at 303,804 to 304,172
_RS01545
ABID97_RS01550: ABID97_RS01550 - esterase-like activity of phytase family protein, at 304,387 to 305,568
_RS01550
ABID97_RS01555: ABID97_RS01555 - pyrroline-5-carboxylate reductase, at 305,565 to 306,422
_RS01555
ABID97_RS01560: ABID97_RS01560 - 4-hydroxybenzoate octaprenyltransferase, at 306,448 to 307,308
_RS01560
Position (kb) 304
305
306 Strain fitness (log2 ratio) -1
0
1
2 at 304.180 kb on - strand at 304.180 kb on - strand at 304.180 kb on - strand at 304.351 kb on + strand at 304.351 kb on + strand at 304.351 kb on + strand at 304.352 kb on - strand at 304.352 kb on - strand at 304.374 kb on + strand at 304.375 kb on - strand at 304.572 kb on + strand, within ABID97_RS01550 at 304.572 kb on + strand, within ABID97_RS01550 at 304.572 kb on + strand, within ABID97_RS01550 at 304.573 kb on - strand, within ABID97_RS01550 at 304.573 kb on - strand, within ABID97_RS01550 at 304.574 kb on + strand, within ABID97_RS01550 at 304.574 kb on + strand, within ABID97_RS01550 at 305.164 kb on + strand, within ABID97_RS01550 at 305.164 kb on + strand, within ABID97_RS01550 at 305.164 kb on + strand, within ABID97_RS01550 at 305.164 kb on + strand, within ABID97_RS01550 at 305.165 kb on - strand, within ABID97_RS01550 at 305.279 kb on - strand, within ABID97_RS01550 at 305.279 kb on - strand, within ABID97_RS01550 at 305.551 kb on + strand at 305.551 kb on + strand at 305.552 kb on - strand at 305.552 kb on - strand at 305.552 kb on - strand at 306.450 kb on - strand at 306.450 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 304,180 - +2.6 304,180 - +1.9 304,180 - +0.3 304,351 + +2.5 304,351 + +0.2 304,351 + +0.2 304,352 - -0.3 304,352 - -0.8 304,374 + -0.3 304,375 - -0.7 304,572 + ABID97_RS01550 0.16 -0.0 304,572 + ABID97_RS01550 0.16 -0.5 304,572 + ABID97_RS01550 0.16 +0.2 304,573 - ABID97_RS01550 0.16 +0.5 304,573 - ABID97_RS01550 0.16 +0.1 304,574 + ABID97_RS01550 0.16 +0.5 304,574 + ABID97_RS01550 0.16 +0.1 305,164 + ABID97_RS01550 0.66 +0.1 305,164 + ABID97_RS01550 0.66 -0.7 305,164 + ABID97_RS01550 0.66 +0.2 305,164 + ABID97_RS01550 0.66 +0.0 305,165 - ABID97_RS01550 0.66 +0.3 305,279 - ABID97_RS01550 0.75 +0.6 305,279 - ABID97_RS01550 0.75 -0.1 305,551 + -0.1 305,551 + -0.5 305,552 - +0.3 305,552 - -0.3 305,552 - -0.1 306,450 - +0.0 306,450 - +0.4
Or see this region's nucleotide sequence