Experiment: Cisplatin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt setB and yeiW overlap by 4 nucleotides yeiW and yeiP are separated by 154 nucleotides yeiP and yeiQ are separated by 222 nucleotides
b2170: setB - lactose/glucose efflux system (NCBI), at 2,261,885 to 2,263,066
setB
b4502: yeiW - hypothetical protein (NCBI), at 2,263,063 to 2,263,317
yeiW
b2171: yeiP - putative elongation factor (VIMSS), at 2,263,472 to 2,264,044
yeiP
b2172: yeiQ - predicted dehydrogenase, NAD-dependent (NCBI), at 2,264,267 to 2,265,733
yeiQ
Position (kb)
2263
2264 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2262.160 kb on - strand, within setB at 2262.373 kb on - strand, within setB at 2262.590 kb on - strand, within setB at 2262.590 kb on - strand, within setB at 2262.752 kb on - strand, within setB at 2262.916 kb on + strand, within setB at 2262.925 kb on - strand, within setB at 2263.022 kb on + strand at 2263.022 kb on + strand at 2263.060 kb on + strand at 2263.088 kb on - strand at 2263.102 kb on - strand, within yeiW at 2263.102 kb on - strand, within yeiW at 2263.129 kb on + strand, within yeiW at 2263.136 kb on + strand, within yeiW at 2263.213 kb on - strand, within yeiW at 2263.213 kb on - strand, within yeiW at 2263.217 kb on + strand, within yeiW at 2263.286 kb on - strand, within yeiW at 2263.321 kb on - strand at 2263.563 kb on + strand, within yeiP at 2263.563 kb on + strand, within yeiP at 2263.575 kb on + strand, within yeiP at 2263.743 kb on - strand, within yeiP at 2263.813 kb on + strand, within yeiP at 2263.826 kb on + strand, within yeiP at 2263.826 kb on + strand, within yeiP at 2263.908 kb on - strand, within yeiP at 2263.929 kb on - strand, within yeiP at 2263.960 kb on - strand, within yeiP at 2264.034 kb on - strand at 2264.039 kb on + strand at 2264.174 kb on - strand at 2264.184 kb on - strand at 2264.228 kb on - strand at 2264.233 kb on + strand at 2264.272 kb on - strand at 2264.316 kb on - strand at 2264.316 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.1 mg/ml remove 2,262,160 - setB b2170 0.23 -0.3 2,262,373 - setB b2170 0.41 -0.8 2,262,590 - setB b2170 0.60 +1.2 2,262,590 - setB b2170 0.60 +3.5 2,262,752 - setB b2170 0.73 -0.8 2,262,916 + setB b2170 0.87 +1.5 2,262,925 - setB b2170 0.88 -1.0 2,263,022 + -0.7 2,263,022 + -2.1 2,263,060 + -0.4 2,263,088 - -2.9 2,263,102 - yeiW b4502 0.15 -1.2 2,263,102 - yeiW b4502 0.15 +0.5 2,263,129 + yeiW b4502 0.26 -2.8 2,263,136 + yeiW b4502 0.29 -1.1 2,263,213 - yeiW b4502 0.59 -0.4 2,263,213 - yeiW b4502 0.59 +0.6 2,263,217 + yeiW b4502 0.60 +0.6 2,263,286 - yeiW b4502 0.87 +0.4 2,263,321 - +0.0 2,263,563 + yeiP b2171 0.16 -0.1 2,263,563 + yeiP b2171 0.16 -0.8 2,263,575 + yeiP b2171 0.18 +1.8 2,263,743 - yeiP b2171 0.47 +0.2 2,263,813 + yeiP b2171 0.60 +2.7 2,263,826 + yeiP b2171 0.62 -0.8 2,263,826 + yeiP b2171 0.62 -0.6 2,263,908 - yeiP b2171 0.76 -2.3 2,263,929 - yeiP b2171 0.80 +0.7 2,263,960 - yeiP b2171 0.85 -0.9 2,264,034 - +0.2 2,264,039 + +0.0 2,264,174 - +0.7 2,264,184 - -0.6 2,264,228 - +1.5 2,264,233 + +1.3 2,264,272 - -0.4 2,264,316 - +0.8 2,264,316 - +2.8
Or see this region's nucleotide sequence