Experiment: Cisplatin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjiG and yjiH overlap by 4 nucleotides yjiH and yjiI are separated by 249 nucleotides yjiI and yjiJ are separated by 12 nucleotides
b4329: yjiG - conserved inner membrane protein (NCBI), at 4,557,562 to 4,558,023
yjiG
b4330: yjiH - orf, hypothetical protein (VIMSS), at 4,558,020 to 4,558,703
yjiH
b4331: yjiI - orf, hypothetical protein (VIMSS), at 4,558,953 to 4,559,507
yjiI
b4332: yjiJ - predicted inner membrane protein (NCBI), at 4,559,520 to 4,560,698
yjiJ
Position (kb)
4558
4559
4560 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 4558.050 kb on - strand at 4558.104 kb on - strand, within yjiH at 4558.116 kb on + strand, within yjiH at 4558.181 kb on - strand, within yjiH at 4558.185 kb on + strand, within yjiH at 4558.211 kb on - strand, within yjiH at 4558.301 kb on + strand, within yjiH at 4558.328 kb on + strand, within yjiH at 4558.392 kb on + strand, within yjiH at 4558.392 kb on + strand, within yjiH at 4558.428 kb on + strand, within yjiH at 4558.741 kb on - strand at 4558.880 kb on - strand at 4559.040 kb on + strand, within yjiI at 4559.040 kb on + strand, within yjiI at 4559.045 kb on - strand, within yjiI at 4559.050 kb on + strand, within yjiI at 4559.050 kb on + strand, within yjiI at 4559.082 kb on + strand, within yjiI at 4559.082 kb on + strand, within yjiI at 4559.113 kb on + strand, within yjiI at 4559.141 kb on - strand, within yjiI at 4559.183 kb on - strand, within yjiI at 4559.196 kb on + strand, within yjiI at 4559.204 kb on - strand, within yjiI at 4559.204 kb on - strand, within yjiI at 4559.204 kb on - strand, within yjiI at 4559.286 kb on - strand, within yjiI at 4559.286 kb on - strand, within yjiI at 4559.338 kb on - strand, within yjiI at 4559.340 kb on - strand, within yjiI at 4559.361 kb on - strand, within yjiI at 4559.482 kb on - strand at 4559.542 kb on - strand at 4559.557 kb on + strand at 4559.575 kb on + strand at 4559.575 kb on + strand at 4559.644 kb on - strand, within yjiJ at 4559.649 kb on - strand, within yjiJ at 4559.651 kb on - strand, within yjiJ at 4559.690 kb on - strand, within yjiJ at 4559.734 kb on - strand, within yjiJ at 4559.734 kb on - strand, within yjiJ at 4559.747 kb on + strand, within yjiJ at 4559.788 kb on - strand, within yjiJ at 4559.882 kb on - strand, within yjiJ at 4559.927 kb on + strand, within yjiJ at 4559.927 kb on + strand, within yjiJ at 4559.978 kb on - strand, within yjiJ at 4559.984 kb on - strand, within yjiJ at 4560.037 kb on + strand, within yjiJ at 4560.047 kb on + strand, within yjiJ at 4560.047 kb on - strand, within yjiJ at 4560.047 kb on - strand, within yjiJ at 4560.068 kb on - strand, within yjiJ at 4560.068 kb on - strand, within yjiJ at 4560.148 kb on + strand, within yjiJ at 4560.150 kb on - strand, within yjiJ at 4560.220 kb on + strand, within yjiJ at 4560.223 kb on - strand, within yjiJ at 4560.294 kb on - strand, within yjiJ at 4560.353 kb on - strand, within yjiJ at 4560.355 kb on + strand, within yjiJ at 4560.460 kb on + strand, within yjiJ at 4560.499 kb on + strand, within yjiJ at 4560.505 kb on + strand, within yjiJ
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.1 mg/ml remove 4,558,050 - -0.9 4,558,104 - yjiH b4330 0.12 -1.0 4,558,116 + yjiH b4330 0.14 +0.9 4,558,181 - yjiH b4330 0.24 -1.0 4,558,185 + yjiH b4330 0.24 +1.6 4,558,211 - yjiH b4330 0.28 +1.4 4,558,301 + yjiH b4330 0.41 -0.7 4,558,328 + yjiH b4330 0.45 -1.5 4,558,392 + yjiH b4330 0.54 -0.8 4,558,392 + yjiH b4330 0.54 -0.4 4,558,428 + yjiH b4330 0.60 +1.9 4,558,741 - -1.2 4,558,880 - -2.4 4,559,040 + yjiI b4331 0.16 -1.4 4,559,040 + yjiI b4331 0.16 +2.1 4,559,045 - yjiI b4331 0.17 -0.6 4,559,050 + yjiI b4331 0.17 -1.4 4,559,050 + yjiI b4331 0.17 +0.4 4,559,082 + yjiI b4331 0.23 +1.3 4,559,082 + yjiI b4331 0.23 +2.7 4,559,113 + yjiI b4331 0.29 +0.9 4,559,141 - yjiI b4331 0.34 +0.8 4,559,183 - yjiI b4331 0.41 -1.1 4,559,196 + yjiI b4331 0.44 -0.1 4,559,204 - yjiI b4331 0.45 +3.2 4,559,204 - yjiI b4331 0.45 +1.6 4,559,204 - yjiI b4331 0.45 +2.0 4,559,286 - yjiI b4331 0.60 +1.4 4,559,286 - yjiI b4331 0.60 -0.7 4,559,338 - yjiI b4331 0.69 +1.0 4,559,340 - yjiI b4331 0.70 +0.1 4,559,361 - yjiI b4331 0.74 +0.1 4,559,482 - +1.0 4,559,542 - +0.2 4,559,557 + +0.4 4,559,575 + -1.2 4,559,575 + +0.2 4,559,644 - yjiJ b4332 0.11 -0.6 4,559,649 - yjiJ b4332 0.11 +1.1 4,559,651 - yjiJ b4332 0.11 +0.6 4,559,690 - yjiJ b4332 0.14 -1.4 4,559,734 - yjiJ b4332 0.18 +0.4 4,559,734 - yjiJ b4332 0.18 -2.1 4,559,747 + yjiJ b4332 0.19 +1.1 4,559,788 - yjiJ b4332 0.23 +0.1 4,559,882 - yjiJ b4332 0.31 +0.1 4,559,927 + yjiJ b4332 0.35 +1.4 4,559,927 + yjiJ b4332 0.35 -0.9 4,559,978 - yjiJ b4332 0.39 +1.9 4,559,984 - yjiJ b4332 0.39 -0.1 4,560,037 + yjiJ b4332 0.44 -1.8 4,560,047 + yjiJ b4332 0.45 +0.1 4,560,047 - yjiJ b4332 0.45 +0.2 4,560,047 - yjiJ b4332 0.45 -0.0 4,560,068 - yjiJ b4332 0.46 +0.1 4,560,068 - yjiJ b4332 0.46 -0.4 4,560,148 + yjiJ b4332 0.53 +4.0 4,560,150 - yjiJ b4332 0.53 -0.9 4,560,220 + yjiJ b4332 0.59 +0.4 4,560,223 - yjiJ b4332 0.60 +1.4 4,560,294 - yjiJ b4332 0.66 +2.3 4,560,353 - yjiJ b4332 0.71 +1.7 4,560,355 + yjiJ b4332 0.71 +0.2 4,560,460 + yjiJ b4332 0.80 +0.2 4,560,499 + yjiJ b4332 0.83 +0.2 4,560,505 + yjiJ b4332 0.84 -0.5
Or see this region's nucleotide sequence