Strain Fitness in Escherichia coli BW25113 around b4052
Experiment: Cisplatin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.1 mg/ml |
---|---|---|---|---|---|
remove | |||||
4,261,346 | - | +0.5 | |||
4,261,346 | - | +0.2 | |||
4,261,358 | - | +1.2 | |||
4,261,358 | - | +1.0 | |||
4,261,382 | - | qor | b4051 | 0.11 | +1.5 |
4,261,382 | - | qor | b4051 | 0.11 | +1.5 |
4,261,394 | - | qor | b4051 | 0.12 | +0.9 |
4,261,406 | - | qor | b4051 | 0.14 | +2.5 |
4,261,406 | - | qor | b4051 | 0.14 | +1.3 |
4,261,478 | - | qor | b4051 | 0.21 | -1.9 |
4,261,587 | + | qor | b4051 | 0.32 | +1.7 |
4,261,593 | - | qor | b4051 | 0.33 | -0.7 |
4,261,610 | + | qor | b4051 | 0.34 | +0.0 |
4,261,698 | - | qor | b4051 | 0.43 | +1.4 |
4,261,698 | - | qor | b4051 | 0.43 | +1.6 |
4,261,955 | + | qor | b4051 | 0.70 | +2.2 |
4,261,955 | - | qor | b4051 | 0.70 | +0.9 |
4,261,977 | + | qor | b4051 | 0.72 | +0.0 |
4,261,984 | - | qor | b4051 | 0.72 | -2.1 |
4,261,991 | + | qor | b4051 | 0.73 | -0.2 |
4,262,007 | - | qor | b4051 | 0.75 | -0.8 |
4,262,007 | - | qor | b4051 | 0.75 | +0.7 |
4,262,007 | - | qor | b4051 | 0.75 | -0.6 |
4,262,042 | - | qor | b4051 | 0.78 | -1.5 |
4,262,079 | - | qor | b4051 | 0.82 | +2.5 |
4,262,195 | - | +0.7 | |||
4,263,790 | + | -0.5 | |||
4,263,828 | - | -0.3 | |||
4,263,828 | - | +0.1 | |||
4,263,871 | - | +0.6 | |||
4,263,919 | + | alr | b4053 | 0.11 | +1.1 |
4,263,928 | - | alr | b4053 | 0.11 | -0.1 |
4,264,017 | + | alr | b4053 | 0.20 | -1.3 |
4,264,017 | + | alr | b4053 | 0.20 | -0.5 |
4,264,102 | - | alr | b4053 | 0.28 | -0.9 |
4,264,142 | - | alr | b4053 | 0.31 | -1.0 |
4,264,146 | - | alr | b4053 | 0.32 | -0.9 |
4,264,146 | - | alr | b4053 | 0.32 | +2.6 |
4,264,220 | - | alr | b4053 | 0.38 | +2.3 |
4,264,232 | + | alr | b4053 | 0.40 | -1.0 |
4,264,240 | - | alr | b4053 | 0.40 | -1.3 |
4,264,240 | - | alr | b4053 | 0.40 | -0.4 |
4,264,240 | - | alr | b4053 | 0.40 | -0.5 |
4,264,240 | - | alr | b4053 | 0.40 | +1.4 |
4,264,266 | + | alr | b4053 | 0.43 | -1.1 |
4,264,406 | - | alr | b4053 | 0.56 | -0.8 |
4,264,406 | - | alr | b4053 | 0.56 | -1.1 |
4,264,424 | + | alr | b4053 | 0.57 | +0.8 |
4,264,462 | + | alr | b4053 | 0.61 | -0.5 |
4,264,525 | - | alr | b4053 | 0.67 | -0.1 |
4,264,525 | - | alr | b4053 | 0.67 | +0.7 |
4,264,525 | - | alr | b4053 | 0.67 | +0.5 |
4,264,525 | - | alr | b4053 | 0.67 | +2.5 |
4,264,620 | + | alr | b4053 | 0.75 | -0.1 |
4,264,620 | + | alr | b4053 | 0.75 | +1.0 |
4,264,639 | - | alr | b4053 | 0.77 | -2.9 |
4,264,658 | + | alr | b4053 | 0.79 | -0.7 |
4,264,658 | + | alr | b4053 | 0.79 | -0.3 |
4,264,661 | + | alr | b4053 | 0.79 | -1.7 |
4,264,661 | + | alr | b4053 | 0.79 | +0.0 |
4,264,661 | - | alr | b4053 | 0.79 | +0.0 |
4,264,664 | - | alr | b4053 | 0.80 | -1.7 |
4,264,722 | - | alr | b4053 | 0.85 | -0.5 |
4,264,729 | + | alr | b4053 | 0.86 | -0.9 |
Or see this region's nucleotide sequence