Strain Fitness in Escherichia coli BW25113 around b3702

Experiment: Cisplatin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdnaN and dnaA are separated by 4 nucleotidesdnaA and rpmH are separated by 606 nucleotidesrpmH and rnpA are separated by 16 nucleotides b3701: dnaN - DNA polymerase III subunit beta (NCBI), at 3,879,244 to 3,880,344 dnaN b3702: dnaA - chromosomal replication initiation protein (NCBI), at 3,880,349 to 3,881,752 dnaA b3703: rpmH - 50S ribosomal protein L34 (NCBI), at 3,882,359 to 3,882,499 rpmH b3704: rnpA - ribonuclease P (NCBI), at 3,882,516 to 3,882,875 rnpA Position (kb) 3880 3881 3882Strain fitness (log2 ratio) -2 -1 0 1at 3881.798 kb on - strandat 3881.847 kb on - strandat 3881.847 kb on - strandat 3881.884 kb on - strandat 3881.914 kb on + strandat 3881.932 kb on - strandat 3881.959 kb on + strandat 3881.972 kb on - strandat 3881.976 kb on + strandat 3882.000 kb on - strandat 3882.000 kb on - strandat 3882.009 kb on - strandat 3882.088 kb on + strandat 3882.097 kb on - strandat 3882.110 kb on + strandat 3882.110 kb on + strandat 3882.118 kb on - strandat 3882.118 kb on - strandat 3882.120 kb on - strandat 3882.163 kb on + strandat 3882.172 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.1 mg/ml
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3,881,798 - -0.7
3,881,847 - -1.1
3,881,847 - +0.5
3,881,884 - -0.1
3,881,914 + +1.5
3,881,932 - -1.4
3,881,959 + -0.8
3,881,972 - -0.6
3,881,976 + +1.3
3,882,000 - -0.1
3,882,000 - +0.5
3,882,009 - +0.4
3,882,088 + -1.3
3,882,097 - -0.6
3,882,110 + -0.5
3,882,110 + -0.7
3,882,118 - +1.5
3,882,118 - +0.5
3,882,120 - -1.9
3,882,163 + +1.4
3,882,172 - -1.5

Or see this region's nucleotide sequence