Experiment: Cisplatin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt glcC and yghO are separated by 6 nucleotides yghO and insH-9 are separated by 34 nucleotides
b2980: glcC - DNA-binding transcriptional dual regulator, glycolate-binding (NCBI), at 3,126,294 to 3,127,058
glcC
b2981: yghO - predicted DNA-binding transcriptional regulator (RefSeq), at 3,127,065 to 3,128,165
yghO
b2982: insH-9 - IS5 transposase and trans-activator (NCBI), at 3,128,200 to 3,129,216
insH-9
Position (kb)
3127
3128
3129 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3126.066 kb on - strand at 3126.280 kb on - strand at 3126.282 kb on - strand at 3126.282 kb on - strand at 3126.345 kb on - strand at 3126.396 kb on - strand, within glcC at 3126.427 kb on + strand, within glcC at 3126.510 kb on + strand, within glcC at 3126.598 kb on + strand, within glcC at 3126.626 kb on + strand, within glcC at 3126.740 kb on - strand, within glcC at 3126.753 kb on - strand, within glcC at 3126.865 kb on - strand, within glcC at 3126.889 kb on + strand, within glcC at 3126.926 kb on - strand, within glcC at 3127.086 kb on - strand at 3127.101 kb on - strand at 3127.148 kb on - strand at 3127.169 kb on - strand at 3127.169 kb on - strand at 3127.234 kb on - strand, within yghO at 3127.274 kb on - strand, within yghO at 3127.274 kb on - strand, within yghO at 3127.435 kb on + strand, within yghO at 3127.566 kb on + strand, within yghO at 3127.566 kb on + strand, within yghO at 3127.607 kb on + strand, within yghO at 3127.697 kb on - strand, within yghO at 3127.762 kb on - strand, within yghO at 3127.762 kb on - strand, within yghO at 3127.762 kb on - strand, within yghO at 3127.764 kb on + strand, within yghO at 3127.772 kb on - strand, within yghO at 3127.846 kb on - strand, within yghO at 3127.909 kb on - strand, within yghO at 3127.909 kb on - strand, within yghO at 3127.966 kb on + strand, within yghO at 3128.034 kb on + strand, within yghO at 3128.034 kb on + strand, within yghO at 3128.034 kb on + strand, within yghO
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.1 mg/ml remove 3,126,066 - +2.8 3,126,280 - +2.5 3,126,282 - -1.5 3,126,282 - -2.4 3,126,345 - +0.1 3,126,396 - glcC b2980 0.13 -1.0 3,126,427 + glcC b2980 0.17 -1.8 3,126,510 + glcC b2980 0.28 +1.5 3,126,598 + glcC b2980 0.40 -0.3 3,126,626 + glcC b2980 0.43 -1.0 3,126,740 - glcC b2980 0.58 -0.7 3,126,753 - glcC b2980 0.60 -0.1 3,126,865 - glcC b2980 0.75 -0.1 3,126,889 + glcC b2980 0.78 -1.4 3,126,926 - glcC b2980 0.83 -0.6 3,127,086 - +0.9 3,127,101 - +1.9 3,127,148 - +0.8 3,127,169 - -1.5 3,127,169 - -0.8 3,127,234 - yghO b2981 0.15 -1.9 3,127,274 - yghO b2981 0.19 +1.3 3,127,274 - yghO b2981 0.19 +1.3 3,127,435 + yghO b2981 0.34 +0.3 3,127,566 + yghO b2981 0.46 +3.6 3,127,566 + yghO b2981 0.46 -0.5 3,127,607 + yghO b2981 0.49 +2.0 3,127,697 - yghO b2981 0.57 +0.0 3,127,762 - yghO b2981 0.63 +0.6 3,127,762 - yghO b2981 0.63 +1.6 3,127,762 - yghO b2981 0.63 +0.3 3,127,764 + yghO b2981 0.63 +0.4 3,127,772 - yghO b2981 0.64 +0.4 3,127,846 - yghO b2981 0.71 +0.4 3,127,909 - yghO b2981 0.77 -2.1 3,127,909 - yghO b2981 0.77 +1.6 3,127,966 + yghO b2981 0.82 -0.0 3,128,034 + yghO b2981 0.88 +1.0 3,128,034 + yghO b2981 0.88 +0.6 3,128,034 + yghO b2981 0.88 +1.8
Or see this region's nucleotide sequence