Experiment: Cisplatin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yqgA and pheV are separated by 105 nucleotides pheV and yghD are separated by 148 nucleotides yghD and yghE are separated by 1 nucleotides yghE and yghF are separated by 2 nucleotides
b2966: yqgA - predicted inner membrane protein (NCBI), at 3,107,575 to 3,108,282
yqgA
b2967: pheV - tRNA-Phe (NCBI), at 3,108,388 to 3,108,463
pheV
b2968: yghD - predicted secretion pathway M-type protein, membrane anchored (NCBI), at 3,108,612 to 3,109,148
yghD
b2969: yghE - predicted secretion pathway protein, L-type protein (pseudogene) (RefSeq), at 3,109,150 to 3,110,112
yghE
b2970: yghF - predicted secretion pathway protein, C-type protein (NCBI), at 3,110,115 to 3,110,963
yghF
Position (kb)
3108
3109
3110 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3107.616 kb on - strand at 3107.895 kb on + strand, within yqgA at 3107.918 kb on - strand, within yqgA at 3107.932 kb on - strand, within yqgA at 3108.033 kb on + strand, within yqgA at 3108.117 kb on + strand, within yqgA at 3108.160 kb on + strand, within yqgA at 3108.181 kb on - strand, within yqgA at 3108.221 kb on - strand at 3108.222 kb on + strand at 3108.222 kb on + strand at 3108.378 kb on - strand at 3108.378 kb on - strand at 3108.593 kb on + strand at 3108.629 kb on - strand at 3108.629 kb on - strand at 3108.649 kb on + strand at 3108.766 kb on + strand, within yghD at 3108.821 kb on + strand, within yghD at 3108.833 kb on - strand, within yghD at 3108.833 kb on - strand, within yghD at 3108.878 kb on + strand, within yghD at 3108.931 kb on - strand, within yghD at 3108.940 kb on + strand, within yghD at 3108.940 kb on + strand, within yghD at 3109.078 kb on - strand, within yghD at 3109.098 kb on - strand at 3109.123 kb on - strand at 3109.174 kb on + strand at 3109.220 kb on - strand at 3109.437 kb on + strand, within yghE at 3109.538 kb on + strand, within yghE at 3109.551 kb on + strand, within yghE at 3109.704 kb on + strand, within yghE at 3109.704 kb on + strand, within yghE at 3109.712 kb on - strand, within yghE at 3109.886 kb on - strand, within yghE at 3109.933 kb on - strand, within yghE at 3110.044 kb on - strand at 3110.073 kb on + strand at 3110.073 kb on + strand at 3110.085 kb on - strand at 3110.085 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.1 mg/ml remove 3,107,616 - +0.5 3,107,895 + yqgA b2966 0.45 +0.6 3,107,918 - yqgA b2966 0.48 +0.5 3,107,932 - yqgA b2966 0.50 -0.6 3,108,033 + yqgA b2966 0.65 +0.0 3,108,117 + yqgA b2966 0.77 +0.1 3,108,160 + yqgA b2966 0.83 -2.2 3,108,181 - yqgA b2966 0.86 +2.0 3,108,221 - +0.1 3,108,222 + +0.9 3,108,222 + +1.6 3,108,378 - +2.2 3,108,378 - +0.5 3,108,593 + -0.6 3,108,629 - -0.2 3,108,629 - -2.1 3,108,649 + -0.2 3,108,766 + yghD b2968 0.29 -1.0 3,108,821 + yghD b2968 0.39 -1.3 3,108,833 - yghD b2968 0.41 +0.0 3,108,833 - yghD b2968 0.41 +0.1 3,108,878 + yghD b2968 0.50 +1.0 3,108,931 - yghD b2968 0.59 -1.8 3,108,940 + yghD b2968 0.61 -1.5 3,108,940 + yghD b2968 0.61 -1.8 3,109,078 - yghD b2968 0.87 -1.0 3,109,098 - +0.2 3,109,123 - +0.9 3,109,174 + -0.3 3,109,220 - +0.5 3,109,437 + yghE b2969 0.30 -0.8 3,109,538 + yghE b2969 0.40 -0.6 3,109,551 + yghE b2969 0.42 -0.2 3,109,704 + yghE b2969 0.58 +1.8 3,109,704 + yghE b2969 0.58 -1.3 3,109,712 - yghE b2969 0.58 +2.4 3,109,886 - yghE b2969 0.76 -0.6 3,109,933 - yghE b2969 0.81 +0.8 3,110,044 - -0.1 3,110,073 + +3.5 3,110,073 + +0.9 3,110,085 - +0.4 3,110,085 - -1.6
Or see this region's nucleotide sequence