Strain Fitness in Escherichia coli BW25113 around b2944
Experiment: Cisplatin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.1 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,086,780 | - | galP | b2943 | 0.34 | +1.6 |
3,086,780 | - | galP | b2943 | 0.34 | +0.5 |
3,086,797 | + | galP | b2943 | 0.35 | -1.4 |
3,086,886 | + | galP | b2943 | 0.42 | +1.6 |
3,086,886 | + | galP | b2943 | 0.42 | -1.6 |
3,086,896 | - | galP | b2943 | 0.42 | -0.8 |
3,086,924 | + | galP | b2943 | 0.44 | +2.1 |
3,086,980 | + | galP | b2943 | 0.48 | +0.1 |
3,087,004 | + | galP | b2943 | 0.50 | +2.5 |
3,087,004 | + | galP | b2943 | 0.50 | +2.1 |
3,087,028 | + | galP | b2943 | 0.52 | -0.9 |
3,087,028 | + | galP | b2943 | 0.52 | +3.7 |
3,087,061 | + | galP | b2943 | 0.54 | -0.9 |
3,087,084 | - | galP | b2943 | 0.56 | +0.4 |
3,087,102 | + | galP | b2943 | 0.57 | +0.3 |
3,087,102 | + | galP | b2943 | 0.57 | +0.6 |
3,087,156 | - | galP | b2943 | 0.61 | +0.5 |
3,087,156 | - | galP | b2943 | 0.61 | -1.7 |
3,087,183 | - | galP | b2943 | 0.63 | +1.4 |
3,087,194 | + | galP | b2943 | 0.64 | -0.9 |
3,087,194 | + | galP | b2943 | 0.64 | +1.0 |
3,087,217 | + | galP | b2943 | 0.65 | +0.2 |
3,087,241 | + | galP | b2943 | 0.67 | +0.7 |
3,087,241 | + | galP | b2943 | 0.67 | +1.5 |
3,087,261 | + | galP | b2943 | 0.68 | +0.4 |
3,087,266 | + | galP | b2943 | 0.69 | -2.8 |
3,087,266 | + | galP | b2943 | 0.69 | +1.8 |
3,087,277 | + | galP | b2943 | 0.70 | -2.3 |
3,087,307 | + | galP | b2943 | 0.72 | +0.1 |
3,087,310 | - | galP | b2943 | 0.72 | +1.1 |
3,087,315 | - | galP | b2943 | 0.72 | +1.4 |
3,087,376 | - | galP | b2943 | 0.77 | -0.0 |
3,087,414 | + | galP | b2943 | 0.79 | +1.7 |
3,087,451 | - | galP | b2943 | 0.82 | -1.2 |
3,087,451 | - | galP | b2943 | 0.82 | +3.1 |
3,087,517 | + | galP | b2943 | 0.87 | -2.5 |
3,087,517 | + | galP | b2943 | 0.87 | +1.4 |
3,087,523 | - | galP | b2943 | 0.87 | +1.4 |
3,087,525 | - | galP | b2943 | 0.87 | -0.6 |
3,087,537 | - | galP | b2943 | 0.88 | -0.6 |
3,087,572 | + | +0.2 | |||
3,087,600 | + | -1.1 | |||
3,087,704 | + | -1.2 | |||
3,087,739 | - | +2.2 | |||
3,087,759 | + | -1.4 | |||
3,087,759 | + | +2.7 | |||
3,087,802 | - | +2.8 | |||
3,087,872 | - | sprT | b2944 | 0.19 | -0.0 |
3,087,872 | - | sprT | b2944 | 0.19 | +0.1 |
3,087,877 | - | sprT | b2944 | 0.20 | +0.8 |
3,087,890 | + | sprT | b2944 | 0.23 | +1.7 |
3,087,892 | + | sprT | b2944 | 0.23 | -1.6 |
3,087,892 | + | sprT | b2944 | 0.23 | -0.0 |
3,087,898 | - | sprT | b2944 | 0.24 | +2.4 |
3,087,898 | - | sprT | b2944 | 0.24 | -2.3 |
3,087,928 | + | sprT | b2944 | 0.30 | +1.1 |
3,087,928 | + | sprT | b2944 | 0.30 | -1.2 |
3,087,950 | + | sprT | b2944 | 0.35 | +1.0 |
3,087,999 | + | sprT | b2944 | 0.45 | +1.6 |
3,088,001 | - | -0.2 | |||
3,088,001 | - | sprT | b2944 | 0.45 | -0.4 |
3,088,048 | + | sprT | b2944 | 0.54 | +0.8 |
3,088,048 | + | sprT | b2944 | 0.54 | +0.4 |
3,088,099 | + | sprT | b2944 | 0.65 | +1.4 |
3,088,350 | + | +1.9 | |||
3,088,350 | + | -1.2 | |||
3,088,406 | - | -1.2 | |||
3,088,406 | - | +1.0 | |||
3,088,453 | + | endA | b2945 | 0.12 | -0.9 |
3,088,619 | - | endA | b2945 | 0.35 | +0.4 |
3,088,683 | - | endA | b2945 | 0.44 | -0.7 |
3,088,724 | + | endA | b2945 | 0.50 | -3.3 |
3,088,732 | - | endA | b2945 | 0.51 | -0.2 |
3,088,732 | - | endA | b2945 | 0.51 | -0.5 |
3,088,875 | - | endA | b2945 | 0.71 | -0.3 |
3,088,885 | - | endA | b2945 | 0.73 | -1.9 |
3,088,962 | + | endA | b2945 | 0.84 | -1.9 |
3,088,962 | + | endA | b2945 | 0.84 | -0.4 |
3,088,962 | + | endA | b2945 | 0.84 | -1.2 |
3,088,970 | - | endA | b2945 | 0.85 | -1.6 |
3,088,970 | - | endA | b2945 | 0.85 | -0.2 |
3,089,020 | - | -2.2 | |||
3,089,038 | - | -1.4 | |||
3,089,038 | - | -0.3 | |||
3,089,038 | - | +3.0 | |||
3,089,191 | + | +1.0 |
Or see this region's nucleotide sequence