Strain Fitness in Escherichia coli BW25113 around b2913
Experiment: Cisplatin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.1 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,054,348 | + | ygfA | b2912 | 0.15 | -0.2 |
3,054,388 | - | ygfA | b2912 | 0.23 | +1.4 |
3,054,480 | - | ygfA | b2912 | 0.40 | -1.6 |
3,054,480 | - | ygfA | b2912 | 0.40 | +0.8 |
3,054,524 | + | ygfA | b2912 | 0.48 | +0.4 |
3,054,532 | - | ygfA | b2912 | 0.49 | -0.8 |
3,054,578 | + | ygfA | b2912 | 0.57 | +1.4 |
3,054,696 | - | ygfA | b2912 | 0.79 | +0.4 |
3,054,704 | + | ygfA | b2912 | 0.80 | +1.4 |
3,054,704 | + | ygfA | b2912 | 0.80 | +1.4 |
3,054,711 | + | ygfA | b2912 | 0.82 | -0.2 |
3,054,711 | + | ygfA | b2912 | 0.82 | -0.6 |
3,054,788 | - | -2.4 | |||
3,054,897 | + | rygC | b4446 | 0.19 | -0.9 |
3,054,946 | - | +0.1 | |||
3,054,946 | - | -1.1 | |||
3,055,023 | - | -1.2 | |||
3,055,023 | - | +0.1 | |||
3,055,280 | - | +0.6 | |||
3,055,352 | + | serA | b2913 | 0.12 | +2.7 |
3,055,352 | + | serA | b2913 | 0.12 | -1.6 |
3,055,437 | - | serA | b2913 | 0.19 | -2.5 |
3,055,535 | - | serA | b2913 | 0.27 | +0.9 |
3,055,611 | + | serA | b2913 | 0.33 | +1.8 |
3,055,611 | + | serA | b2913 | 0.33 | -1.2 |
3,055,642 | - | serA | b2913 | 0.36 | -1.2 |
3,055,674 | - | serA | b2913 | 0.38 | +1.7 |
3,055,678 | + | serA | b2913 | 0.39 | -1.2 |
3,055,678 | + | serA | b2913 | 0.39 | -0.0 |
3,055,678 | + | serA | b2913 | 0.39 | -0.8 |
3,055,708 | + | serA | b2913 | 0.41 | +0.6 |
3,055,745 | + | serA | b2913 | 0.44 | -0.9 |
3,055,745 | + | serA | b2913 | 0.44 | +0.4 |
3,055,749 | - | serA | b2913 | 0.45 | -0.8 |
3,055,749 | - | serA | b2913 | 0.45 | +2.4 |
3,055,802 | - | serA | b2913 | 0.49 | -0.4 |
3,055,843 | - | serA | b2913 | 0.52 | -0.1 |
3,055,850 | + | serA | b2913 | 0.53 | -0.2 |
3,055,869 | - | serA | b2913 | 0.54 | +2.2 |
3,056,013 | + | serA | b2913 | 0.66 | +2.4 |
3,056,118 | + | serA | b2913 | 0.74 | -1.1 |
3,056,118 | - | serA | b2913 | 0.74 | +0.8 |
3,056,132 | - | serA | b2913 | 0.76 | -0.9 |
3,056,132 | - | serA | b2913 | 0.76 | -1.5 |
3,056,177 | + | serA | b2913 | 0.79 | +0.4 |
3,056,177 | + | serA | b2913 | 0.79 | +3.5 |
3,056,253 | - | serA | b2913 | 0.85 | -0.1 |
3,056,345 | + | -1.4 | |||
3,056,388 | - | +1.1 | |||
3,056,487 | - | +0.2 | |||
3,056,551 | - | -0.6 | |||
3,056,578 | + | -0.4 | |||
3,056,600 | - | -2.2 | |||
3,056,617 | + | -0.6 | |||
3,057,409 | - | -1.9 |
Or see this region's nucleotide sequence