Experiment: Cisplatin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hycE and hycD are separated by 17 nucleotides hycD and hycC are separated by 2 nucleotides
b2721: hycE - hydrogenase 3, large subunit (NCBI), at 2,842,784 to 2,844,493
hycE
b2722: hycD - hydrogenase 3, membrane subunit (NCBI), at 2,844,511 to 2,845,434
hycD
b2723: hycC - NADH dehydrogenase subunit N (NCBI), at 2,845,437 to 2,847,263
hycC
Position (kb)
2844
2845
2846 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2843.564 kb on + strand, within hycE at 2843.572 kb on - strand, within hycE at 2843.600 kb on + strand, within hycE at 2843.600 kb on + strand, within hycE at 2843.626 kb on + strand, within hycE at 2843.631 kb on + strand, within hycE at 2843.663 kb on + strand, within hycE at 2843.674 kb on - strand, within hycE at 2843.704 kb on + strand, within hycE at 2843.704 kb on + strand, within hycE at 2843.731 kb on - strand, within hycE at 2843.753 kb on - strand, within hycE at 2843.753 kb on - strand, within hycE at 2843.765 kb on + strand, within hycE at 2843.952 kb on + strand, within hycE at 2844.142 kb on + strand, within hycE at 2844.231 kb on + strand, within hycE at 2844.284 kb on - strand, within hycE at 2844.422 kb on + strand at 2844.422 kb on + strand at 2844.443 kb on - strand at 2844.462 kb on + strand at 2844.470 kb on - strand at 2844.470 kb on - strand at 2844.569 kb on - strand at 2844.576 kb on + strand at 2844.607 kb on - strand, within hycD at 2844.761 kb on - strand, within hycD at 2844.789 kb on - strand, within hycD at 2844.937 kb on + strand, within hycD at 2844.945 kb on - strand, within hycD at 2844.945 kb on - strand, within hycD at 2844.984 kb on + strand, within hycD at 2845.140 kb on - strand, within hycD at 2845.212 kb on - strand, within hycD at 2845.231 kb on - strand, within hycD at 2845.269 kb on - strand, within hycD at 2845.320 kb on + strand, within hycD at 2845.428 kb on - strand at 2845.428 kb on - strand at 2845.487 kb on + strand at 2845.594 kb on + strand at 2845.594 kb on + strand at 2846.220 kb on + strand, within hycC at 2846.226 kb on + strand, within hycC at 2846.264 kb on + strand, within hycC at 2846.269 kb on + strand, within hycC at 2846.269 kb on + strand, within hycC at 2846.269 kb on + strand, within hycC at 2846.269 kb on + strand, within hycC at 2846.272 kb on - strand, within hycC at 2846.345 kb on - strand, within hycC at 2846.381 kb on + strand, within hycC at 2846.406 kb on - strand, within hycC at 2846.406 kb on - strand, within hycC
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.1 mg/ml remove 2,843,564 + hycE b2721 0.46 -0.5 2,843,572 - hycE b2721 0.46 -2.1 2,843,600 + hycE b2721 0.48 -2.1 2,843,600 + hycE b2721 0.48 +1.3 2,843,626 + hycE b2721 0.49 -2.5 2,843,631 + hycE b2721 0.50 +0.3 2,843,663 + hycE b2721 0.51 +2.0 2,843,674 - hycE b2721 0.52 -1.0 2,843,704 + hycE b2721 0.54 -1.0 2,843,704 + hycE b2721 0.54 +1.1 2,843,731 - hycE b2721 0.55 +1.8 2,843,753 - hycE b2721 0.57 -0.1 2,843,753 - hycE b2721 0.57 -2.2 2,843,765 + hycE b2721 0.57 +0.3 2,843,952 + hycE b2721 0.68 +1.5 2,844,142 + hycE b2721 0.79 -0.4 2,844,231 + hycE b2721 0.85 +0.6 2,844,284 - hycE b2721 0.88 -1.7 2,844,422 + -1.4 2,844,422 + +0.8 2,844,443 - -1.8 2,844,462 + -1.1 2,844,470 - -0.0 2,844,470 - -2.0 2,844,569 - -2.0 2,844,576 + +1.3 2,844,607 - hycD b2722 0.10 +2.6 2,844,761 - hycD b2722 0.27 -1.3 2,844,789 - hycD b2722 0.30 +4.1 2,844,937 + hycD b2722 0.46 +0.6 2,844,945 - hycD b2722 0.47 +0.3 2,844,945 - hycD b2722 0.47 +1.7 2,844,984 + hycD b2722 0.51 +0.1 2,845,140 - hycD b2722 0.68 -0.1 2,845,212 - hycD b2722 0.76 +0.8 2,845,231 - hycD b2722 0.78 +1.3 2,845,269 - hycD b2722 0.82 +1.3 2,845,320 + hycD b2722 0.88 +2.0 2,845,428 - -1.7 2,845,428 - -0.7 2,845,487 + +1.9 2,845,594 + +1.2 2,845,594 + +0.0 2,846,220 + hycC b2723 0.43 -0.2 2,846,226 + hycC b2723 0.43 +0.8 2,846,264 + hycC b2723 0.45 +0.8 2,846,269 + hycC b2723 0.46 -1.0 2,846,269 + hycC b2723 0.46 +1.9 2,846,269 + hycC b2723 0.46 +1.3 2,846,269 + hycC b2723 0.46 -0.8 2,846,272 - hycC b2723 0.46 -1.7 2,846,345 - hycC b2723 0.50 -0.8 2,846,381 + hycC b2723 0.52 -1.1 2,846,406 - hycC b2723 0.53 +2.0 2,846,406 - hycC b2723 0.53 -0.7
Or see this region's nucleotide sequence