Experiment: Cisplatin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yfjT and yfjU are separated by 386 nucleotides yfjU and yfjV are separated by 12 nucleotides yfjV and yfjW are separated by 135 nucleotides
b2637: yfjT - CP4-57 prophage; predicted protein (NCBI), at 2,769,170 to 2,769,637
yfjT
b2638: yfjU - CP4-57 prophage; conserved protein (RefSeq), at 2,770,024 to 2,770,176
yfjU
b2641: yfjV - orf, hypothetical protein (VIMSS), at 2,770,189 to 2,771,204
yfjV
b2642: yfjW - CP4-57 prophage; predicted inner membrane protein (NCBI), at 2,771,340 to 2,773,043
yfjW
Position (kb)
2770
2771
2772 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2769.242 kb on - strand, within yfjT at 2769.288 kb on - strand, within yfjT at 2769.528 kb on - strand, within yfjT at 2769.528 kb on - strand, within yfjT at 2769.650 kb on + strand at 2769.650 kb on + strand at 2769.658 kb on + strand at 2769.737 kb on - strand at 2769.737 kb on - strand at 2769.822 kb on - strand at 2769.822 kb on - strand at 2769.945 kb on - strand at 2770.051 kb on + strand, within yfjU at 2770.051 kb on + strand, within yfjU at 2770.070 kb on - strand, within yfjU at 2770.124 kb on - strand, within yfjU at 2770.124 kb on - strand, within yfjU at 2770.127 kb on - strand, within yfjU at 2770.176 kb on + strand at 2770.194 kb on + strand at 2770.194 kb on + strand at 2770.239 kb on + strand at 2770.247 kb on - strand at 2770.357 kb on + strand, within yfjV at 2770.357 kb on + strand, within yfjV at 2770.422 kb on + strand, within yfjV at 2770.433 kb on + strand, within yfjV at 2770.433 kb on + strand, within yfjV at 2770.570 kb on + strand, within yfjV at 2770.570 kb on + strand, within yfjV at 2770.594 kb on + strand, within yfjV at 2770.594 kb on + strand, within yfjV at 2770.602 kb on - strand, within yfjV at 2770.609 kb on + strand, within yfjV at 2770.609 kb on + strand, within yfjV at 2770.735 kb on + strand, within yfjV at 2770.743 kb on - strand, within yfjV at 2770.743 kb on - strand, within yfjV at 2770.796 kb on - strand, within yfjV at 2770.856 kb on + strand, within yfjV at 2770.951 kb on + strand, within yfjV at 2770.952 kb on - strand, within yfjV at 2770.952 kb on - strand at 2770.971 kb on + strand, within yfjV at 2770.971 kb on + strand, within yfjV at 2771.013 kb on - strand, within yfjV at 2771.065 kb on + strand, within yfjV at 2771.065 kb on + strand, within yfjV at 2771.085 kb on - strand, within yfjV at 2771.127 kb on + strand at 2771.127 kb on + strand at 2771.152 kb on + strand at 2771.167 kb on - strand at 2771.195 kb on + strand at 2771.195 kb on + strand at 2771.205 kb on + strand at 2771.208 kb on - strand at 2771.208 kb on - strand at 2771.208 kb on - strand at 2771.230 kb on + strand at 2771.244 kb on + strand at 2771.247 kb on - strand at 2771.279 kb on + strand at 2771.320 kb on + strand at 2771.332 kb on + strand at 2771.332 kb on + strand at 2771.371 kb on + strand at 2771.371 kb on + strand at 2772.159 kb on - strand, within yfjW at 2772.159 kb on - strand, within yfjW
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.1 mg/ml remove 2,769,242 - yfjT b2637 0.15 -1.2 2,769,288 - yfjT b2637 0.25 +1.7 2,769,528 - yfjT b2637 0.76 +1.3 2,769,528 - yfjT b2637 0.76 -0.7 2,769,650 + -3.2 2,769,650 + -1.0 2,769,658 + -0.4 2,769,737 - -1.3 2,769,737 - +0.8 2,769,822 - +0.5 2,769,822 - -1.0 2,769,945 - -2.8 2,770,051 + yfjU b2638 0.18 -1.7 2,770,051 + yfjU b2638 0.18 +1.3 2,770,070 - yfjU b2638 0.30 +1.2 2,770,124 - yfjU b2638 0.65 -0.6 2,770,124 - yfjU b2638 0.65 -0.0 2,770,127 - yfjU b2638 0.67 -2.1 2,770,176 + +1.3 2,770,194 + -0.3 2,770,194 + -1.3 2,770,239 + +1.2 2,770,247 - +2.0 2,770,357 + yfjV b2641 0.17 -0.4 2,770,357 + yfjV b2641 0.17 +0.3 2,770,422 + yfjV b2641 0.23 -1.2 2,770,433 + yfjV b2641 0.24 -2.3 2,770,433 + yfjV b2641 0.24 -1.3 2,770,570 + yfjV b2641 0.38 +0.9 2,770,570 + yfjV b2641 0.38 +0.6 2,770,594 + yfjV b2641 0.40 -2.7 2,770,594 + yfjV b2641 0.40 +0.5 2,770,602 - yfjV b2641 0.41 -1.7 2,770,609 + yfjV b2641 0.41 +0.1 2,770,609 + yfjV b2641 0.41 -1.7 2,770,735 + yfjV b2641 0.54 -0.4 2,770,743 - yfjV b2641 0.55 +0.1 2,770,743 - yfjV b2641 0.55 -0.7 2,770,796 - yfjV b2641 0.60 +2.1 2,770,856 + yfjV b2641 0.66 -1.5 2,770,951 + yfjV b2641 0.75 -1.5 2,770,952 - yfjV b2641 0.75 +1.3 2,770,952 - +1.3 2,770,971 + yfjV b2641 0.77 -1.7 2,770,971 + yfjV b2641 0.77 +0.3 2,771,013 - yfjV b2641 0.81 -1.0 2,771,065 + yfjV b2641 0.86 -0.3 2,771,065 + yfjV b2641 0.86 -0.3 2,771,085 - yfjV b2641 0.88 -0.3 2,771,127 + +0.3 2,771,127 + -1.3 2,771,152 + +0.8 2,771,167 - +1.0 2,771,195 + -1.3 2,771,195 + -0.2 2,771,205 + +1.5 2,771,208 - -1.6 2,771,208 - +1.8 2,771,208 - -1.0 2,771,230 + -1.1 2,771,244 + -1.2 2,771,247 - +1.0 2,771,279 + -2.5 2,771,320 + -2.2 2,771,332 + -0.0 2,771,332 + -1.3 2,771,371 + +1.3 2,771,371 + +2.3 2,772,159 - yfjW b2642 0.48 -1.6 2,772,159 - yfjW b2642 0.48 -0.7
Or see this region's nucleotide sequence