Strain Fitness in Escherichia coli BW25113 around b2641

Experiment: Cisplatin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyfjT and yfjU are separated by 386 nucleotidesyfjU and yfjV are separated by 12 nucleotidesyfjV and yfjW are separated by 135 nucleotides b2637: yfjT - CP4-57 prophage; predicted protein (NCBI), at 2,769,170 to 2,769,637 yfjT b2638: yfjU - CP4-57 prophage; conserved protein (RefSeq), at 2,770,024 to 2,770,176 yfjU b2641: yfjV - orf, hypothetical protein (VIMSS), at 2,770,189 to 2,771,204 yfjV b2642: yfjW - CP4-57 prophage; predicted inner membrane protein (NCBI), at 2,771,340 to 2,773,043 yfjW Position (kb) 2770 2771 2772Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2769.242 kb on - strand, within yfjTat 2769.288 kb on - strand, within yfjTat 2769.528 kb on - strand, within yfjTat 2769.528 kb on - strand, within yfjTat 2769.650 kb on + strandat 2769.650 kb on + strandat 2769.658 kb on + strandat 2769.737 kb on - strandat 2769.737 kb on - strandat 2769.822 kb on - strandat 2769.822 kb on - strandat 2769.945 kb on - strandat 2770.051 kb on + strand, within yfjUat 2770.051 kb on + strand, within yfjUat 2770.070 kb on - strand, within yfjUat 2770.124 kb on - strand, within yfjUat 2770.124 kb on - strand, within yfjUat 2770.127 kb on - strand, within yfjUat 2770.176 kb on + strandat 2770.194 kb on + strandat 2770.194 kb on + strandat 2770.239 kb on + strandat 2770.247 kb on - strandat 2770.357 kb on + strand, within yfjVat 2770.357 kb on + strand, within yfjVat 2770.422 kb on + strand, within yfjVat 2770.433 kb on + strand, within yfjVat 2770.433 kb on + strand, within yfjVat 2770.570 kb on + strand, within yfjVat 2770.570 kb on + strand, within yfjVat 2770.594 kb on + strand, within yfjVat 2770.594 kb on + strand, within yfjVat 2770.602 kb on - strand, within yfjVat 2770.609 kb on + strand, within yfjVat 2770.609 kb on + strand, within yfjVat 2770.735 kb on + strand, within yfjVat 2770.743 kb on - strand, within yfjVat 2770.743 kb on - strand, within yfjVat 2770.796 kb on - strand, within yfjVat 2770.856 kb on + strand, within yfjVat 2770.951 kb on + strand, within yfjVat 2770.952 kb on - strand, within yfjVat 2770.952 kb on - strandat 2770.971 kb on + strand, within yfjVat 2770.971 kb on + strand, within yfjVat 2771.013 kb on - strand, within yfjVat 2771.065 kb on + strand, within yfjVat 2771.065 kb on + strand, within yfjVat 2771.085 kb on - strand, within yfjVat 2771.127 kb on + strandat 2771.127 kb on + strandat 2771.152 kb on + strandat 2771.167 kb on - strandat 2771.195 kb on + strandat 2771.195 kb on + strandat 2771.205 kb on + strandat 2771.208 kb on - strandat 2771.208 kb on - strandat 2771.208 kb on - strandat 2771.230 kb on + strandat 2771.244 kb on + strandat 2771.247 kb on - strandat 2771.279 kb on + strandat 2771.320 kb on + strandat 2771.332 kb on + strandat 2771.332 kb on + strandat 2771.371 kb on + strandat 2771.371 kb on + strandat 2772.159 kb on - strand, within yfjWat 2772.159 kb on - strand, within yfjW

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.1 mg/ml
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2,769,242 - yfjT b2637 0.15 -1.2
2,769,288 - yfjT b2637 0.25 +1.7
2,769,528 - yfjT b2637 0.76 +1.3
2,769,528 - yfjT b2637 0.76 -0.7
2,769,650 + -3.2
2,769,650 + -1.0
2,769,658 + -0.4
2,769,737 - -1.3
2,769,737 - +0.8
2,769,822 - +0.5
2,769,822 - -1.0
2,769,945 - -2.8
2,770,051 + yfjU b2638 0.18 -1.7
2,770,051 + yfjU b2638 0.18 +1.3
2,770,070 - yfjU b2638 0.30 +1.2
2,770,124 - yfjU b2638 0.65 -0.6
2,770,124 - yfjU b2638 0.65 -0.0
2,770,127 - yfjU b2638 0.67 -2.1
2,770,176 + +1.3
2,770,194 + -0.3
2,770,194 + -1.3
2,770,239 + +1.2
2,770,247 - +2.0
2,770,357 + yfjV b2641 0.17 -0.4
2,770,357 + yfjV b2641 0.17 +0.3
2,770,422 + yfjV b2641 0.23 -1.2
2,770,433 + yfjV b2641 0.24 -2.3
2,770,433 + yfjV b2641 0.24 -1.3
2,770,570 + yfjV b2641 0.38 +0.9
2,770,570 + yfjV b2641 0.38 +0.6
2,770,594 + yfjV b2641 0.40 -2.7
2,770,594 + yfjV b2641 0.40 +0.5
2,770,602 - yfjV b2641 0.41 -1.7
2,770,609 + yfjV b2641 0.41 +0.1
2,770,609 + yfjV b2641 0.41 -1.7
2,770,735 + yfjV b2641 0.54 -0.4
2,770,743 - yfjV b2641 0.55 +0.1
2,770,743 - yfjV b2641 0.55 -0.7
2,770,796 - yfjV b2641 0.60 +2.1
2,770,856 + yfjV b2641 0.66 -1.5
2,770,951 + yfjV b2641 0.75 -1.5
2,770,952 - yfjV b2641 0.75 +1.3
2,770,952 - +1.3
2,770,971 + yfjV b2641 0.77 -1.7
2,770,971 + yfjV b2641 0.77 +0.3
2,771,013 - yfjV b2641 0.81 -1.0
2,771,065 + yfjV b2641 0.86 -0.3
2,771,065 + yfjV b2641 0.86 -0.3
2,771,085 - yfjV b2641 0.88 -0.3
2,771,127 + +0.3
2,771,127 + -1.3
2,771,152 + +0.8
2,771,167 - +1.0
2,771,195 + -1.3
2,771,195 + -0.2
2,771,205 + +1.5
2,771,208 - -1.6
2,771,208 - +1.8
2,771,208 - -1.0
2,771,230 + -1.1
2,771,244 + -1.2
2,771,247 - +1.0
2,771,279 + -2.5
2,771,320 + -2.2
2,771,332 + -0.0
2,771,332 + -1.3
2,771,371 + +1.3
2,771,371 + +2.3
2,772,159 - yfjW b2642 0.48 -1.6
2,772,159 - yfjW b2642 0.48 -0.7

Or see this region's nucleotide sequence