Strain Fitness in Escherichia coli BW25113 around b2582

Experiment: Cisplatin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyfiF and trxC are separated by 206 nucleotidestrxC and yfiP are separated by 68 nucleotidesyfiP and yfiQ are separated by 31 nucleotides b2581: yfiF - predicted methyltransferase (NCBI), at 2,715,513 to 2,716,550 yfiF b2582: trxC - thioredoxin 2 (NCBI), at 2,716,757 to 2,717,176 trxC b2583: yfiP - orf, hypothetical protein (VIMSS), at 2,717,245 to 2,717,943 yfiP b2584: yfiQ - fused predicted acyl-CoA synthetase: NAD(P)-binding subunit/ATP-binding subunit (NCBI), at 2,717,975 to 2,720,635 yfiQ Position (kb) 2716 2717 2718Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2715.854 kb on + strand, within yfiFat 2715.879 kb on - strand, within yfiFat 2715.997 kb on + strand, within yfiFat 2715.997 kb on + strand, within yfiFat 2715.997 kb on + strand, within yfiFat 2715.997 kb on + strand, within yfiFat 2716.005 kb on - strand, within yfiFat 2716.005 kb on - strand, within yfiFat 2716.005 kb on - strand, within yfiFat 2716.005 kb on - strand, within yfiFat 2716.141 kb on + strand, within yfiFat 2716.141 kb on + strandat 2716.183 kb on - strand, within yfiFat 2716.183 kb on - strand, within yfiFat 2716.229 kb on + strand, within yfiFat 2716.265 kb on - strand, within yfiFat 2716.265 kb on - strand, within yfiFat 2716.313 kb on + strand, within yfiFat 2716.313 kb on + strand, within yfiFat 2716.387 kb on - strand, within yfiFat 2716.387 kb on - strand, within yfiFat 2716.440 kb on + strand, within yfiFat 2716.446 kb on + strand, within yfiFat 2716.485 kb on + strandat 2716.742 kb on + strandat 2716.762 kb on - strandat 2716.832 kb on + strand, within trxCat 2717.016 kb on - strand, within trxCat 2717.103 kb on + strand, within trxCat 2717.387 kb on - strand, within yfiPat 2717.387 kb on - strand, within yfiPat 2717.445 kb on + strand, within yfiPat 2717.445 kb on + strand, within yfiPat 2717.458 kb on - strand, within yfiPat 2717.591 kb on - strand, within yfiPat 2717.591 kb on - strand, within yfiPat 2717.605 kb on + strand, within yfiPat 2717.612 kb on + strand, within yfiPat 2717.612 kb on + strand, within yfiPat 2717.767 kb on - strand, within yfiPat 2717.817 kb on - strand, within yfiPat 2717.846 kb on + strand, within yfiPat 2717.846 kb on + strand, within yfiPat 2717.854 kb on - strand, within yfiPat 2717.902 kb on + strandat 2717.902 kb on + strandat 2717.979 kb on - strandat 2718.064 kb on - strandat 2718.151 kb on - strandat 2718.151 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.1 mg/ml
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2,715,854 + yfiF b2581 0.33 +2.6
2,715,879 - yfiF b2581 0.35 -0.4
2,715,997 + yfiF b2581 0.47 +0.7
2,715,997 + yfiF b2581 0.47 +0.3
2,715,997 + yfiF b2581 0.47 -0.1
2,715,997 + yfiF b2581 0.47 +3.1
2,716,005 - yfiF b2581 0.47 +1.0
2,716,005 - yfiF b2581 0.47 -1.1
2,716,005 - yfiF b2581 0.47 +0.5
2,716,005 - yfiF b2581 0.47 -1.5
2,716,141 + yfiF b2581 0.61 +0.3
2,716,141 + +2.3
2,716,183 - yfiF b2581 0.65 -1.9
2,716,183 - yfiF b2581 0.65 -0.3
2,716,229 + yfiF b2581 0.69 +1.1
2,716,265 - yfiF b2581 0.72 -0.3
2,716,265 - yfiF b2581 0.72 -0.8
2,716,313 + yfiF b2581 0.77 -1.0
2,716,313 + yfiF b2581 0.77 -1.1
2,716,387 - yfiF b2581 0.84 +1.3
2,716,387 - yfiF b2581 0.84 -2.4
2,716,440 + yfiF b2581 0.89 +0.6
2,716,446 + yfiF b2581 0.90 +0.9
2,716,485 + +0.1
2,716,742 + -2.0
2,716,762 - +1.0
2,716,832 + trxC b2582 0.18 +1.6
2,717,016 - trxC b2582 0.62 +2.9
2,717,103 + trxC b2582 0.82 +0.0
2,717,387 - yfiP b2583 0.20 +2.3
2,717,387 - yfiP b2583 0.20 +0.3
2,717,445 + yfiP b2583 0.29 +0.3
2,717,445 + yfiP b2583 0.29 +1.3
2,717,458 - yfiP b2583 0.30 +1.7
2,717,591 - yfiP b2583 0.49 +0.5
2,717,591 - yfiP b2583 0.49 +0.8
2,717,605 + yfiP b2583 0.52 -1.9
2,717,612 + yfiP b2583 0.53 -0.3
2,717,612 + yfiP b2583 0.53 +2.5
2,717,767 - yfiP b2583 0.75 +1.3
2,717,817 - yfiP b2583 0.82 +0.0
2,717,846 + yfiP b2583 0.86 +0.3
2,717,846 + yfiP b2583 0.86 -0.4
2,717,854 - yfiP b2583 0.87 +1.9
2,717,902 + -1.9
2,717,902 + -1.7
2,717,979 - -1.3
2,718,064 - -1.1
2,718,151 - +0.1
2,718,151 - +0.5

Or see this region's nucleotide sequence