Experiment: Cisplatin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt b2438 and eutL are separated by 12 nucleotides eutL and eutC are separated by 9 nucleotides eutC and eutB are separated by 20 nucleotides
b2438: b2438 - orf, hypothetical protein (VIMSS), at 2,553,250 to 2,553,750
b2438
b2439: eutL - predicted carboxysome structural protein with predicted role in ethanolamine utilization (NCBI), at 2,553,763 to 2,554,422
eutL
b2440: eutC - ethanolamine ammonia-lyase small subunit (NCBI), at 2,554,432 to 2,555,319
eutC
b2441: eutB - ethanolamine ammonia-lyase, heavy chain (VIMSS), at 2,555,340 to 2,556,701
eutB
Position (kb)
2554
2555
2556 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2553.469 kb on - strand, within b2438 at 2553.469 kb on - strand, within b2438 at 2553.477 kb on + strand, within b2438 at 2553.478 kb on + strand, within b2438 at 2553.478 kb on + strand, within b2438 at 2553.478 kb on + strand, within b2438 at 2553.478 kb on + strand, within b2438 at 2553.513 kb on - strand, within b2438 at 2553.554 kb on - strand, within b2438 at 2553.598 kb on - strand, within b2438 at 2553.732 kb on + strand at 2553.922 kb on + strand, within eutL at 2554.133 kb on - strand, within eutL at 2554.133 kb on - strand, within eutL at 2554.218 kb on - strand, within eutL at 2554.225 kb on + strand, within eutL at 2554.260 kb on + strand, within eutL at 2554.325 kb on - strand, within eutL at 2554.436 kb on - strand at 2554.533 kb on - strand, within eutC at 2554.718 kb on + strand, within eutC at 2554.720 kb on + strand, within eutC at 2554.723 kb on - strand, within eutC at 2554.723 kb on - strand, within eutC at 2554.757 kb on - strand, within eutC at 2554.805 kb on + strand, within eutC at 2554.883 kb on + strand, within eutC at 2554.901 kb on - strand, within eutC at 2554.901 kb on - strand, within eutC at 2554.970 kb on + strand, within eutC at 2555.001 kb on + strand, within eutC at 2555.038 kb on - strand, within eutC at 2555.038 kb on - strand, within eutC at 2555.097 kb on + strand, within eutC at 2555.097 kb on + strand, within eutC at 2555.176 kb on + strand, within eutC at 2555.270 kb on + strand at 2555.270 kb on + strand at 2555.551 kb on - strand, within eutB at 2555.551 kb on - strand, within eutB at 2555.630 kb on - strand, within eutB at 2555.700 kb on - strand, within eutB at 2555.700 kb on - strand, within eutB at 2555.728 kb on + strand, within eutB at 2555.795 kb on - strand, within eutB at 2556.024 kb on + strand, within eutB at 2556.024 kb on + strand, within eutB at 2556.026 kb on + strand, within eutB at 2556.149 kb on + strand, within eutB at 2556.151 kb on - strand, within eutB at 2556.157 kb on - strand, within eutB
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.1 mg/ml remove 2,553,469 - b2438 b2438 0.44 -0.8 2,553,469 - b2438 b2438 0.44 -0.3 2,553,477 + b2438 b2438 0.45 +0.9 2,553,478 + b2438 b2438 0.46 +1.3 2,553,478 + b2438 b2438 0.46 +0.5 2,553,478 + b2438 b2438 0.46 -0.3 2,553,478 + b2438 b2438 0.46 -0.7 2,553,513 - b2438 b2438 0.52 +1.0 2,553,554 - b2438 b2438 0.61 -0.8 2,553,598 - b2438 b2438 0.69 -1.7 2,553,732 + +0.7 2,553,922 + eutL b2439 0.24 +0.3 2,554,133 - eutL b2439 0.56 +1.3 2,554,133 - eutL b2439 0.56 -2.7 2,554,218 - eutL b2439 0.69 +2.0 2,554,225 + eutL b2439 0.70 +1.3 2,554,260 + eutL b2439 0.75 +0.9 2,554,325 - eutL b2439 0.85 +1.1 2,554,436 - +0.8 2,554,533 - eutC b2440 0.11 -1.6 2,554,718 + eutC b2440 0.32 +2.0 2,554,720 + eutC b2440 0.32 +2.1 2,554,723 - eutC b2440 0.33 +1.1 2,554,723 - eutC b2440 0.33 +0.6 2,554,757 - eutC b2440 0.37 -1.3 2,554,805 + eutC b2440 0.42 +1.1 2,554,883 + eutC b2440 0.51 +0.3 2,554,901 - eutC b2440 0.53 +1.3 2,554,901 - eutC b2440 0.53 -1.1 2,554,970 + eutC b2440 0.61 -0.1 2,555,001 + eutC b2440 0.64 +0.7 2,555,038 - eutC b2440 0.68 +0.9 2,555,038 - eutC b2440 0.68 +2.8 2,555,097 + eutC b2440 0.75 +0.5 2,555,097 + eutC b2440 0.75 -1.1 2,555,176 + eutC b2440 0.84 -0.4 2,555,270 + +0.3 2,555,270 + +1.6 2,555,551 - eutB b2441 0.15 -1.1 2,555,551 - eutB b2441 0.15 -0.3 2,555,630 - eutB b2441 0.21 -2.4 2,555,700 - eutB b2441 0.26 +2.3 2,555,700 - eutB b2441 0.26 +0.3 2,555,728 + eutB b2441 0.28 -0.5 2,555,795 - eutB b2441 0.33 -2.1 2,556,024 + eutB b2441 0.50 -1.5 2,556,024 + eutB b2441 0.50 -1.1 2,556,026 + eutB b2441 0.50 +3.9 2,556,149 + eutB b2441 0.59 +0.5 2,556,151 - eutB b2441 0.60 -1.9 2,556,157 - eutB b2441 0.60 +1.4
Or see this region's nucleotide sequence